The Immune Landscape of Cancer. (Q52720878)

6 May 2018

title

The Immune Landscape of Cancer. (English)

1 reference

6 May 2018

Eduard Porta-Pardo

0 references

Hui Shen

0 references

Aedin C Culhane

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Jonathan S Serody

1 reference

Cancer Genome Atlas Research Network

6 May 2018

Galen F Gao

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Antonio Colaprico

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Cancer Genome Atlas Research Network

1 reference

6 May 2018

Benjamin G Vincent

1 reference

6 May 2018

Robert A Holt

0 references

Alexander J Lazar

0 references

0 references

Justin Guinney

1 reference

6 May 2018

Andrea Califano

Andrea Califano

1 reference

6 May 2018

Toni K Choueiri

Toni K Choueiri

1 reference

6 May 2018

Andrew D Cherniack

Andrew D Cherniack

1 reference

6 May 2018

author name string

Vésteinn Thorsson

1 reference

6 May 2018

David L Gibbs

1 reference

6 May 2018

Scott D Brown

1 reference

6 May 2018

Denise Wolf

1 reference

6 May 2018

Dante S Bortone

1 reference

6 May 2018

Tai-Hsien Ou Yang

1 reference

6 May 2018

Christopher L Plaisier

1 reference

6 May 2018

James A Eddy

1 reference

6 May 2018

Elad Ziv

1 reference

6 May 2018

Evan O Paull

1 reference

6 May 2018

I K Ashok Sivakumar

1 reference

6 May 2018

Andrew J Gentles

1 reference

6 May 2018

Raunaq Malhotra

1 reference

6 May 2018

Farshad Farshidfar

1 reference

6 May 2018

Joel S Parker

1 reference

6 May 2018

Lisle E Mose

1 reference

6 May 2018

Nam Sy Vo

1 reference

6 May 2018

Jianfang Liu

1 reference

6 May 2018

Yuexin Liu

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6 May 2018

Janet Rader

1 reference

6 May 2018

Varsha Dhankani

1 reference

6 May 2018

Sheila M Reynolds

1 reference

6 May 2018

Reanne Bowlby

1 reference

6 May 2018

Dimitris Anastassiou

1 reference

6 May 2018

Davide Bedognetti

1 reference

6 May 2018

Arvind Rao

1 reference

6 May 2018

Ken Chen

1 reference

6 May 2018

Alexander Krasnitz

1 reference

6 May 2018

Hai Hu

1 reference

6 May 2018

Tathiane M Malta

1 reference

6 May 2018

Houtan Noushmehr

1 reference

6 May 2018

Chandra Sekhar Pedamallu

1 reference

6 May 2018

Susan Bullman

1 reference

6 May 2018

Akinyemi I Ojesina

1 reference

6 May 2018

Andrew Lamb

1 reference

6 May 2018

Wanding Zhou

1 reference

6 May 2018

John N Weinstein

1 reference

6 May 2018

Joel Saltz

1 reference

6 May 2018

Charles E Rabkin

1 reference

6 May 2018

Elizabeth G Demicco

1 reference

6 May 2018

Mary L Disis

1 reference

6 May 2018

Llya Shmulevich

1 reference

6 May 2018

language of work or name

English

0 references

publication date

4 April 2018

1 reference

6 May 2018

published in

Immunity

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6 May 2018

volume

1 reference

6 May 2018

issue

1 reference

6 May 2018

page(s)

812-830.e14

1 reference

6 May 2018

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics.

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Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures

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25 August 2018

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Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer

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Comprehensive analyses of tumor immunity: implications for cancer immunotherapy

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A reference panel of 64,976 haplotypes for genotype imputation

25 August 2018

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Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer

25 August 2018

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Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis.

25 August 2018

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Mutation Drivers of Immunological Responses to Cancer

25 August 2018

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Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types

25 August 2018

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Functional characterization of somatic mutations in cancer using network-based inference of protein activity

25 August 2018

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The Ensembl Variant Effect Predictor

25 August 2018

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Near-optimal probabilistic RNA-seq quantification

25 August 2018

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NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets

25 August 2018

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Genomic and Transcriptomic Features of Response to Anti-PD-1 Therapy in Metastatic Melanoma

25 August 2018

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Disentangling the relationship between tumor genetic programs and immune responsiveness

25 August 2018

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Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade

25 August 2018

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Genomic analyses identify molecular subtypes of pancreatic cancer

25 August 2018

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Pan-cancer analysis of intratumor heterogeneity as a prognostic determinant of survival

25 August 2018

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25 August 2018

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Molecular Profiling Reveals Biologically Discrete Subsets and Pathways of Progression in Diffuse Glioma

25 August 2018

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Compendium of Immune Signatures Identifies Conserved and Species-Specific Biology in Response to Inflammation

25 August 2018

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25 August 2018

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Profiling tissue-resident T cell repertoires by RNA sequencing

25 August 2018

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Comprehensive analysis of cancer-associated somatic mutations in class I HLA genes

25 August 2018

1 reference

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Predicting effective microRNA target sites in mammalian mRNAs

25 August 2018

1 reference

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A draft network of ligand-receptor-mediated multicellular signalling in human

25 August 2018

1 reference

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The prognostic landscape of genes and infiltrating immune cells across human cancers

25 August 2018

1 reference

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Genomic Classification of Cutaneous Melanoma

25 August 2018

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The correlations between IL-17 vs. Th17 cells and cancer patient survival: a systematic review

25 August 2018

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cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism

25 August 2018

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The promise of γδ T cells and the γδ T cell receptor for cancer immunotherapy

25 August 2018

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Robust enumeration of cell subsets from tissue expression profiles

25 August 2018

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Molecular and genetic properties of tumors associated with local immune cytolytic activity

25 August 2018

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microRNAs function in CD8+T cell biology

25 August 2018

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Effects of BRAF mutations and BRAF inhibition on immune responses to melanoma

25 August 2018

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Identification of causal genetic drivers of human disease through systems-level analysis of regulatory networks.

25 August 2018

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25 August 2018

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OptiType: precision HLA typing from next-generation sequencing data

25 August 2018

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Neo-antigens predicted by tumor genome meta-analysis correlate with increased patient survival

25 August 2018

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Gene co-expression modules as clinically relevant hallmarks of breast cancer diversity

25 August 2018

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Spatiotemporal dynamics of intratumoral immune cells reveal the immune landscape in human cancer.

25 August 2018

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Pan-cancer patterns of somatic copy number alteration

25 August 2018

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25 August 2018

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The continuum of cancer immunosurveillance: prognostic, predictive, and mechanistic signatures

25 August 2018

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Development of a prognostic model for breast cancer survival in an open challenge environment.

25 August 2018

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Interpretation of genomic variants using a unified biological network approach

25 August 2018

1 reference

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Biomolecular events in cancer revealed by attractor metagenes

25 August 2018

1 reference

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Fast and accurate read mapping with approximate seeds and multiple backtracking

25 August 2018

1 reference

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TFClass: an expandable hierarchical classification of human transcription factors

25 August 2018

1 reference

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STAR: ultrafast universal RNA-seq aligner

25 August 2018

1 reference

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Structure-based prediction of protein–protein interactions on a genome-wide scale

25 August 2018

1 reference

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GENCODE: the reference human genome annotation for The ENCODE Project

25 August 2018

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iBBiG: iterative binary bi-clustering of gene sets

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers.

25 August 2018

1 reference

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Absolute quantification of somatic DNA alterations in human cancer

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

25 August 2018

1 reference

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Integrated genomic analyses of ovarian carcinoma

25 August 2018

1 reference

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GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Hallmarks of Cancer: The Next Generation

25 August 2018

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CD277 is a negative co-stimulatory molecule universally expressed by ovarian cancer microenvironmental cells

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Improved prognostic classification of breast cancer defined by antagonistic activation patterns of immune response pathway modules

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Regularization Paths for Generalized Linear Models via Coordinate Descent

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Transforming growth factor beta (TGF-beta) and inflammation in cancer

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Systematic RNA interference reveals that oncogenic KRAS-driven cancers require TBK1

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

MEME SUITE: tools for motif discovery and searching

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Fast and accurate short read alignment with Burrows-Wheeler transform

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

The macrophage colony-stimulating factor 1 response signature in breast carcinoma

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

WGCNA: an R package for weighted correlation network analysis

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

IMGT, the international ImMunoGeneTics information system.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Mastermind-like transcriptional co-activators: emerging roles in regulating cross talk among multiple signaling pathways.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Using Weeder for the discovery of conserved transcription factor binding sites.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Using genetic markers to orient the edges in quantitative trait networks: the NEO software

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Eigengene networks for studying the relationships between co-expression modules

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

The role of site accessibility in microRNA target recognition

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Principal components analysis corrects for stratification in genome-wide association studies

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Macrophage polarization comes of age.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Overall C as a measure of discrimination in survival analysis: model specific population value and confidence interval estimation.

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Gene expression signature of fibroblast serum response predicts human cancer progression: similarities between tumors and wounds

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines

25 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5982584

Oncogenic Signaling Pathways in The Cancer Genome Atlas.

25 August 2018

1 reference

31 March 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.CELL.2018.03.035

Identifiers

DOI

10.1016/J.IMMUNI.2018.03.023

1 reference

6 May 2018

release_w5ynh37gevcdxhjki5ckgaqceq

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/w5ynh37gevcdxhjki5ckgaqceq

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

5982584

0 references

1 reference

6 May 2018