Genomic correlates of response to immune checkpoint therapies in clear cell renal cell carcinoma (Q48307020)

http://europepmc.org/abstract/PMC/6035749

13 July 2018

title

Genomic correlates of response to immune checkpoint therapies in clear cell renal cell carcinoma (English)

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http://europepmc.org/abstract/PMC/6035749

13 July 2018

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

Stephanie A Wankowicz

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

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2 June 2020

Charles G Drake

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2 June 2020

Diana Miao

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2 June 2020

Craig Norton

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Dana Cullen

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Christine Horak

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Marios Giannakis

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2 June 2020

language of work or name

English

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publication date

4 January 2018

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http://europepmc.org/abstract/PMC/6035749

13 July 2018

published in

Science

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2 June 2020

volume

359

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2 June 2020

issue

6377

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2 June 2020

page(s)

801-806

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A pathology atlas of the human cancer transcriptome

2 June 2020

cites work

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The SWI/SNF Protein PBRM1 Restrains VHL-Loss-Driven Clear Cell Renal Cell Carcinoma

15 July 2018

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Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL-/- clear cell renal carcinoma

15 July 2018

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15 July 2018

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15 July 2018

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Whole-Exome Sequencing in Two Extreme Phenotypes of Response to VEGF-Targeted Therapies in Patients With Metastatic Clear Cell Renal Cell Carcinoma

15 July 2018

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Mutations in TSC1, TSC2, and MTOR Are Associated with Response to Rapalogs in Patients with Metastatic Renal Cell Carcinoma

15 July 2018

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15 July 2018

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Nivolumab versus Everolimus in Advanced Renal-Cell Carcinoma

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Decreased PBRM1 expression predicts unfavorable prognosis in patients with clear cell renal cell carcinoma

15 July 2018

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Genomic architecture and evolution of clear cell renal cell carcinomas defined by multiregion sequencing

15 July 2018

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Comprehensive identification of mutational cancer driver genes across 12 tumor types

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15 July 2018

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Comprehensive molecular characterization of clear cell renal cell carcinoma

15 July 2018

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Proteomic and bioinformatic analysis of mammalian SWI/SNF complexes identifies extensive roles in human malignancy.

15 July 2018

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Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network

15 July 2018

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Effects on survival of BAP1 and PBRM1 mutations in sporadic clear-cell renal-cell carcinoma: a retrospective analysis with independent validation

15 July 2018

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Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation

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Loss of PBRM1 expression is associated with renal cell carcinoma progression

15 July 2018

1 reference

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Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

15 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6035749

ContEst: estimating cross-contamination of human samples in next-generation sequencing data

15 July 2018

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Integrated genomic analyses of ovarian carcinoma

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6035749

Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma

15 July 2018

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A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

15 July 2018

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Guidelines for the evaluation of immune therapy activity in solid tumors: immune-related response criteria

15 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6035749

Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing

15 July 2018

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New response evaluation criteria in solid tumours: revised RECIST guideline (version 1.1)

15 July 2018

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15 July 2018

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Adjusting batch effects in microarray expression data using empirical Bayes methods

15 July 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

15 July 2018

1 reference

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Circular binary segmentation for the analysis of array-based DNA copy number data

15 July 2018

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A major chromatin regulator determines resistance of tumor cells to T cell-mediated killing

15 July 2018

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Evolution of Neoantigen Landscape during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer

14 August 2018

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Genomic Biomarkers of a Randomized Trial Comparing First-line Everolimus and Sunitinib in Patients with Metastatic Renal Cell Carcinoma.

14 August 2018

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Genomic Alterations and Outcomes with VEGF-Targeted Therapy in Patients with Clear Cell Renal Cell Carcinoma

14 August 2018

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1126/SCIENCE.AAN5951

Identifiers

DOI

10.1126/SCIENCE.AAN5951

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29301960%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29301960%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

29301960

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29301960%20AND%20SRC:MED&resulttype=core&format=json