Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq. (Q42776089)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

title

Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

14 March 2020

main subject

RNA sequencing

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Priscilla K Brastianos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Orit Rozenblatt-Rosen

object named as

Orit Rozenblatt-Rosen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Michelle Monje

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Danielle Dionne

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Matthew P Frosch

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Keren Yizhak

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Mariella G Filbin

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Volker Hovestadt

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Christine Hebert

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Leah E Escalante

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

McKenzie L Shaw

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Christopher Rodman

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Hiranmayi Ravichandran

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Maristela L Onozato

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Hiroaki Wakimoto

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

William T Curry

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

A John Iafrate

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

Miguel N Rivera

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

language of work or name

English

0 references

publication date

1 March 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

14 March 2020

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89567

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

volume

355

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

issue

6332

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

14 March 2020

brain

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

SMART-Seq

1 reference

A curated database reveals trends in single-cell transcriptomics

Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma

7 February 2021

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Separation and parallel sequencing of the genomes and transcriptomes of single cells using G&T-seq

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

New tools for studying microglia in the mouse and human CNS.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

The Role of RhoA, RhoB and RhoC GTPases in Cell Morphology, Proliferation and Migration in Human Cytomegalovirus (HCMV) Infected Glioblastoma Cells.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Single-cell RNA-seq reveals changes in cell cycle and differentiation programs upon aging of hematopoietic stem cells

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Single-cell analysis reveals a stem-cell program in human metastatic breast cancer cells

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Cell of origin for malignant gliomas and its implication in therapeutic development

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Caught in the cross fire: p53 in inflammation.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Evolution of the cancer stem cell model

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Discovery and saturation analysis of cancer genes across 21 tumour types

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Full-length RNA-seq from single cells using Smart-seq2.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2.

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Single-cell dissection of transcriptional heterogeneity in human colon tumors

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Rho GTPases in PC-3 prostate cancer cell morphology, invasion and tumor cell diapedesis

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Glioma test array for use with formalin-fixed, paraffin-embedded tissue: array comparative genomic hybridization correlates with loss of heterozygosity and fluorescence in situ hybridization

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

A global map of p53 transcription-factor binding sites in the human genome

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Microglia development follows a stepwise program to regulate brain homeostasis

3 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

ETV/Pea3 family transcription factor-encoding genes are overexpressed in CIC-mutant oligodendrogliomas.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Revealing modular organization in the yeast transcriptional network.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5519096

Chromosomal gradient of histone acetylation established by Sas2p and Sir2p functions as a shield against gene silencing

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1126%2FSCIENCE.AAI8478

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.AAI8478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json

14 March 2020

PubMed publication ID

28360267

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28360267%20AND%20SRC:MED&resulttype=core&format=json