NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets (Q36742441)

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scientific article published on 30 March 2016

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English	NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets	scientific article published on 30 March 2016

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

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Massimo Andreatta

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Massimo Andreatta

2

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Morten Nielsen

1

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publication date

30 March 2016

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Europe PubMed Central

PMC publication ID

16 August 2017

Genome Medicine

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Europe PubMed Central

PMC publication ID

16 August 2017

8

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Europe PubMed Central

PMC publication ID

16 August 2017

1

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Europe PubMed Central

PMC publication ID

16 August 2017

33

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Europe PubMed Central

PMC publication ID

16 August 2017

Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Automated benchmarking of peptide-MHC class I binding predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

The IPD and IMGT/HLA database: allele variant databases

1 reference

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29 September 2017

The immune epitope database (IEDB) 3.0.

1 reference

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29 September 2017

Identification and characterisation of peptide binding motifs of six autoimmune disease-associated human leukocyte antigen-class I molecules including HLA-B*39:06.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity

1 reference

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29 September 2017

Tapasin facilitation of natural HLA-A and -B allomorphs is strongly influenced by peptide length, depends on stability, and separates closely related allomorphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

HLA peptide length preferences control CD8+ T cell responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NNAlign: a web-based prediction method allowing non-expert end-user discovery of sequence motifs in quantitative peptide data

1 reference

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29 September 2017

HLArestrictor--a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides

1 reference

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29 September 2017

NetMHCIIpan-2.0 - Improved pan-specific HLA-DR predictions using a novel concurrent alignment and weight optimization training procedure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Derivation of an amino acid similarity matrix for peptide: MHC binding and its application as a Bayesian prior

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NetMHCpan, a method for MHC class I binding prediction beyond humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8-11

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

1 reference

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29 September 2017

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

SYFPEITHI: database for MHC ligands and peptide motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Three-dimensional structure of a peptide extending from one end of a class I MHC binding site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

29 September 2017

Preferred size of peptides that bind to H-2 Kb is sequence dependent

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

28 June 2018

Gapped sequence alignment using artificial neural networks: application to the MHC class I system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

5 September 2018

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

5 September 2018

A comparative study of HLA binding affinity and ligand diversity: implications for generating immunodominant CD8+ T cell responses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

5 September 2018

Accurate approximation method for prediction of class I MHC affinities for peptides of length 8, 10 and 11 using prediction tools trained on 9mers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4812631

5 September 2018

On Information and Sufficiency

1 reference

https://api.crossref.org/works/10.1186%2FS13073-016-0288-X

21 January 2018

Identifiers

10.1186/S13073-016-0288-X

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

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