Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish (Q34723952)

4 August 2017

title

Differential transcript isoform usage pre- and post-zygotic genome activation in zebrafish (English)

1 reference

4 August 2017

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Håvard Aanes

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4 August 2017

Olga Østrup

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4 August 2017

Ingrid S Andersen

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4 August 2017

Lars F Moen

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4 August 2017

Sinnakaruppan Mathavan

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4 August 2017

Philippe Collas

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4 August 2017

Peter Alestrom

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4 August 2017

language of work or name

English

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publication date

15 May 2013

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4 August 2017

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4 August 2017

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4 August 2017

page(s)

331

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Developmental features of DNA methylation during activation of the embryonic zebrafish genome

4 August 2017

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Ending the message: poly(A) signals then and now

7 July 2018

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Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis

7 July 2018

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7 July 2018

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Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition

7 July 2018

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Unravelling the means to an end: RNA polymerase II transcription termination.

7 July 2018

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Genome-wide analysis of translation reveals a critical role for deleted in azoospermia-like (Dazl) at the oocyte-to-zygote transition

7 July 2018

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Improving RNA-Seq expression estimates by correcting for fragment bias

7 July 2018

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Coding potential of the products of alternative splicing in human

7 July 2018

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7 July 2018

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7 July 2018

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Epigenetics in alternative pre-mRNA splicing

7 July 2018

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Genome-wide analysis of alternative splicing in Caenorhabditis elegans

7 July 2018

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Molecular dissection of the migrating posterior lateral line primordium during early development in zebrafish.

7 July 2018

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ZFIN: enhancements and updates to the Zebrafish Model Organism Database

7 July 2018

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DNA Methyltransferase 1-associated Protein (DMAP1) Is a Co-repressor That Stimulates DNA Methylation Globally and Locally at Sites of Double Strand Break Repair

7 July 2018

1 reference

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7 July 2018

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7 July 2018

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Deciphering the splicing code

7 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

7 July 2018

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A signal-noise model for significance analysis of ChIP-seq with negative control

7 July 2018

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Chromatin signature of embryonic pluripotency is established during genome activation

7 July 2018

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Concise review: isoforms of OCT4 contribute to the confusing diversity in stem cell biology

7 July 2018

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Regulation of alternative splicing by histone modifications

7 July 2018

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7 July 2018

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Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

7 July 2018

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7 July 2018

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DAZL relieves miRNA-mediated repression of germline mRNAs by controlling poly(A) tail length in zebrafish

7 July 2018

1 reference

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A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos.

7 July 2018

1 reference

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To localize or not to localize: mRNA fate is in 3'UTR ends

7 July 2018

1 reference

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RNA isolation from embryonic zebrafish and cDNA synthesis for gene expression analysis.

7 July 2018

1 reference

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Fish'n ChIPs: chromatin immunoprecipitation in the zebrafish embryo

7 July 2018

1 reference

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Computational annotation of UTR cis-regulatory modules through Frequent Pattern Mining

7 July 2018

1 reference

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The Sequence Alignment/Map format and SAMtools

7 July 2018

1 reference

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Dazl functions in maintenance of pluripotency and genetic and epigenetic programs of differentiation in mouse primordial germ cells in vivo and in vitro

7 July 2018

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

7 July 2018

1 reference

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Progressive lengthening of 3' untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development.

7 July 2018

1 reference

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TopHat: discovering splice junctions with RNA-Seq

7 July 2018

1 reference

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7 July 2018

1 reference

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Developmental gene regulatory networks in the zebrafish embryo

7 July 2018

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

7 July 2018

1 reference

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Alternative isoform regulation in human tissue transcriptomes

7 July 2018

1 reference

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Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

7 July 2018

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

7 July 2018

1 reference

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ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets

7 July 2018

1 reference

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The maternal-zygotic transition: death and birth of RNAs

7 July 2018

1 reference

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Genome regulation by polycomb and trithorax proteins

7 July 2018

1 reference

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Genome-wide analysis of mammalian promoter architecture and evolution

7 July 2018

1 reference

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Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs

7 July 2018

1 reference

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Transcriptome analysis of zebrafish embryogenesis using microarrays

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Structural and functional diversity generated by alternative mRNA splicing.

7 July 2018

1 reference

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The DAZL family proteins are PABP-binding proteins that regulate translation in germ cells.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

The JAM family of proteins

7 July 2018

1 reference

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The implications of structured 5' untranslated regions on translation and disease

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Active genes are tri-methylated at K4 of histone H3

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Methylation of histone H3 Lys 4 in coding regions of active genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Multi-PDZ domain protein 1 (MUPP1) is concentrated at tight junctions through its possible interaction with claudin-1 and junctional adhesion molecule

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

A gene family required for human germ cell development evolved from an ancient meiotic gene conserved in metazoans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

EMBOSS: the European Molecular Biology Open Software Suite

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

MAGI-1 interacts with beta-catenin and is associated with cell-cell adhesion structures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Transient depletion of xDnmt1 leads to premature gene activation in Xenopus embryos

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

The K box, a conserved 3' UTR sequence motif, negatively regulates accumulation of enhancer of split complex transcripts.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

PDZ domain proteins: Scaffolds for signaling complexes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Stages of embryonic development of the zebrafish

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

The zebrafish midblastula transition

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Altered expression of the calcitonin gene associated with RNA polymorphism.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Calcitonin mRNA polymorphism: peptide switching associated with alternative RNA splicing events

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

β-Catenin 1 and β-catenin 2 play similar and distinct roles in left-right asymmetric development of zebrafish embryos

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Epigenetic complexity during the zebrafish mid-blastula transition

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Prepatterning of developmental gene expression by modified histones before zygotic genome activation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Identification of novel transcripts in annotated genomes using RNA-Seq

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

The tight junction component Claudin E is required for zebrafish epiboly

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

xDnmt1 regulates transcriptional silencing in pre-MBT Xenopus embryos independently of its catalytic function

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

Commitment of cell fate in the early zebrafish embryo

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3747860

26 October 2018

Identifiers

DOI

10.1186/1471-2164-14-331

1 reference

4 August 2017

1 reference

4 August 2017

1 reference