Unravelling the means to an end: RNA polymerase II transcription termination. (Q37864536)

PubMed publication ID

21487437

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21487437%20AND%20SRC:MED&resulttype=core&format=json

28 January 2020

review article

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title

Unravelling the means to an end: RNA polymerase II transcription termination (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json

14 May 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json

14 May 2020

Erika L Pearson

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json

14 May 2020

Claire Moore

series ordinal

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14 May 2020

publication date

13 April 2011

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PubMed publication ID

21487437

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21487437%20AND%20SRC:MED&resulttype=core&format=json

Nature Reviews Molecular Cell Biology

28 January 2020

published in

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14 May 2020

volume

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14 May 2020

issue

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14 May 2020

page(s)

283-294

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Transcription of eukaryotic protein-coding genes

14 May 2020

cites work

1 reference

Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation.

21 January 2018

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Terminating the transcript: breaking up is hard to do.

21 January 2018

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Derailing the locomotive: transcription termination.

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Transcription termination by nuclear RNA polymerases

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Mpk1 MAPK association with the Paf1 complex blocks Sen1-mediated premature transcription termination.

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The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

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Transcriptional interference--a crash course

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Transcriptional termination enhances protein expression in human cells

21 January 2018

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Crosstalk between mRNA 3' end processing and transcription initiation

21 January 2018

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Tracking rates of transcription and splicing in vivo.

21 January 2018

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Shortening of RNA:DNA hybrid in the elongation complex of RNA polymerase is a prerequisite for transcription termination

21 January 2018

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Overlapping pathways dictate termination of RNA polymerase II transcription.

21 January 2018

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A poly(A) addition site and a downstream termination region are required for efficient cessation of transcription by RNA polymerase II in the mouse beta maj-globin gene

21 January 2018

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3' RNA Processing Efficiency Plays a Primary Role in Generating Termination-Competent RNA Polymerase II Elongation Complexes

21 January 2018

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Strong polyadenylation and weak pausing combine to cause efficient termination of transcription in the human Ggamma-globin gene.

21 January 2018

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Gene-specific RNA polymerase II phosphorylation and the CTD code

21 January 2018

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Protein factors in pre-mRNA 3'-end processing.

21 January 2018

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Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation

21 January 2018

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Molecular architecture of the human pre-mRNA 3' processing complex

21 January 2018

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Cracking the RNA polymerase II CTD code

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Progression through the RNA polymerase II CTD cycle

21 January 2018

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Pause sites promote transcriptional termination of mammalian RNA polymerase II

21 January 2018

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RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

21 January 2018

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The two steps of poly(A)-dependent termination, pausing and release, can be uncoupled by truncation of the RNA polymerase II carboxyl-terminal repeat domain

21 January 2018

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The poly(A)-dependent transcriptional pause is mediated by CPSF acting on the body of the polymerase

21 January 2018

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Poly(A) signal-dependent degradation of unprocessed nascent transcripts accompanies poly(A) signal-dependent transcriptional pausing in vitro

21 January 2018

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Splicing-dependent RNA polymerase pausing in yeast

21 January 2018

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Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

21 January 2018

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The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

21 January 2018

1 reference

Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites

21 January 2018

1 reference

The role of Rat1 in coupling mRNA 3'-end processing to transcription termination: implications for a unified allosteric-torpedo model

21 January 2018

1 reference

Cooperative interaction of transcription termination factors with the RNA polymerase II C-terminal domain

21 January 2018

1 reference

Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination

21 January 2018

1 reference

Yeast RNase III triggers polyadenylation-independent transcription termination

21 January 2018

1 reference

Fail-safe transcriptional termination for protein-coding genes in S. cerevisiae.

21 January 2018

1 reference

The many pathways of RNA degradation

21 January 2018

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The sen1(+) gene of Schizosaccharomyces pombe, a homologue of budding yeast SEN1, encodes an RNA and DNA helicase

21 January 2018

1 reference

Repression of gene expression by an exogenous sequence element acting in concert with a heterogeneous nuclear ribonucleoprotein-like protein, Nrd1, and the putative helicase Sen1

21 January 2018

1 reference

RNA-binding protein Nrd1 directs poly(A)-independent 3'-end formation of RNA polymerase II transcripts

21 January 2018

1 reference

Genome-wide distribution of yeast RNA polymerase II and its control by Sen1 helicase

21 January 2018

1 reference

Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription-coupled DNA repair and RNA processing

21 January 2018

1 reference

Sen1p performs two genetically separable functions in transcription and processing of U5 small nuclear RNA in Saccharomyces cerevisiae

21 January 2018

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Yeast Sen1 helicase protects the genome from transcription-associated instability.

21 January 2018

1 reference

Termination of cryptic unstable transcripts is directed by yeast RNA-binding proteins Nrd1 and Nab3.

21 January 2018

1 reference

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

21 January 2018

1 reference

Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination

21 January 2018

1 reference

A novel tandem reporter quantifies RNA polymerase II termination in mammalian cells

21 January 2018

1 reference

Functional role for senataxin, defective in ataxia oculomotor apraxia type 2, in transcriptional regulation

21 January 2018

1 reference

Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

21 January 2018

1 reference

Serine-7 of the RNA polymerase II CTD is specifically required for snRNA gene expression

21 January 2018

1 reference

A Subset of Drosophila Integrator Proteins Is Essential for Efficient U7 snRNA and Spliceosomal snRNA 3′-End Formation

21 January 2018

1 reference

Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II

21 January 2018

1 reference

A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100

21 January 2018

1 reference

Chromatin structure is implicated in "late" elongation checkpoints on the U2 snRNA and beta-actin genes

21 January 2018

1 reference

Coupled RNA processing and transcription of intergenic primary microRNAs

21 January 2018

1 reference

Torpedo Nuclease Rat1 Is Insufficient to Terminate RNA Polymerase II in Vitro

21 January 2018

1 reference

Stability, flexibility, and dynamic interactions of colliding RNA polymerase II elongation complexes

21 January 2018

1 reference

Structure and function of the 5′→3′ exoribonuclease Rat1 and its activating partner Rai1

21 January 2018

1 reference

An allosteric mechanism of Rho-dependent transcription termination

21 January 2018

1 reference

Escherichia coli rho factor induces release of yeast RNA polymerase II but not polymerase I or III.

21 January 2018

1 reference

nusA protein of Escherichia coli is an efficient transcription termination factor for certain terminator sites

21 January 2018

1 reference

Requirement for E. coli NusG protein in factor-dependent transcription termination

21 January 2018

1 reference

Ribosomal protein S4 is a transcription factor with properties remarkably similar to NusA, a protein involved in both non-ribosomal and ribosomal RNA antitermination.

21 January 2018

1 reference

A transcription antiterminator constructs a NusA-dependent shield to the emerging transcript

21 January 2018

1 reference

The NusA N-terminal domain is necessary and sufficient for enhancement of transcriptional pausing via interaction with the RNA exit channel of RNA polymerase

21 January 2018

1 reference

Allosteric control of RNA polymerase by a site that contacts nascent RNA hairpins

21 January 2018

1 reference

The bacteriophage lambda Q antiterminator protein contacts the beta-flap domain of RNA polymerase.

21 January 2018

1 reference

Two Structurally Independent Domains of E. coli NusG Create Regulatory Plasticity via Distinct Interactions with RNA Polymerase and Regulators

21 January 2018

1 reference

Genetic assays to define and characterize protein-protein interactions involved in gene regulation

21 January 2018

1 reference

Functional specialization of transcription elongation factors

21 January 2018

1 reference

Functional regions of the N-terminal domain of the antiterminator RfaH.

21 January 2018

1 reference

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

21 January 2018

1 reference

Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.

21 January 2018

1 reference

Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing

21 January 2018

1 reference

Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7.

21 January 2018

1 reference

Poly(A) signals located near the 5' end of genes are silenced by a general mechanism that prevents premature 3'-end processing

21 January 2018

1 reference

Properties of an intergenic terminator and start site switch that regulate IMD2 transcription in yeast

21 January 2018

1 reference

The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

21 January 2018

1 reference

Uniform transitions of the general RNA polymerase II transcription complex

21 January 2018

1 reference

Chemical-genomic dissection of the CTD code.

21 January 2018

1 reference

Distinct pathways for snoRNA and mRNA termination

21 January 2018

1 reference

The integrator complex recognizes a new double mark on the RNA polymerase II carboxyl-terminal domain

21 January 2018

1 reference

The Ess1 prolyl isomerase is required for transcription termination of small noncoding RNAs via the Nrd1 pathway

21 January 2018

1 reference

cis-Proline-mediated Ser(P)5 Dephosphorylation by the RNA Polymerase II C-terminal Domain Phosphatase Ssu72

21 January 2018

1 reference

Transcript Elongation by RNA Polymerase II.

21 January 2018

1 reference

Transitions in RNA polymerase II elongation complexes at the 3' ends of genes

21 January 2018

1 reference

The Paf1 complex: platform or player in RNA polymerase II transcription?

21 January 2018

1 reference

A role for chromatin remodeling in transcriptional termination by RNA polymerase II.

21 January 2018

1 reference

Regulation of alternative polyadenylation by genomic imprinting

21 January 2018

1 reference

Biased chromatin signatures around polyadenylation sites and exons

21 January 2018

1 reference

Gene silencing: small RNAs control RNA polymerase II elongation.

21 January 2018

1 reference

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation

21 January 2018

1 reference

Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

21 January 2018

1 reference

Strange bedfellows: polyadenylation factors at the promoter

21 January 2018

1 reference

How eukaryotic genes are transcribed

21 January 2018

1 reference

Gene looping is conferred by activator-dependent interaction of transcription initiation and termination machineries

21 January 2018

1 reference

Phosphorylation of TFIIB links transcription initiation and termination.

21 January 2018

1 reference

Pre-mRNA processing reaches back to transcription and ahead to translation

21 January 2018

1 reference

An ending is a new beginning: transcription termination supports re-initiation.

21 January 2018

1 reference

TFIIH-associated Cdk7 kinase functions in phosphorylation of C-terminal domain Ser7 residues, promoter-proximal pausing, and termination by RNA polymerase II

21 January 2018

1 reference

The yeast 5'-3' exonuclease Rat1p functions during transcription elongation by RNA polymerase II.

21 January 2018

1 reference

Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

21 January 2018

1 reference

Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

21 January 2018

1 reference

Coupling termination of transcription to messenger RNA maturation in yeast.

21 January 2018

1 reference

Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination

21 January 2018

1 reference

CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11.

21 January 2018

1 reference

Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination

21 January 2018

1 reference

The role of the putative 3' end processing endonuclease Ysh1p in mRNA and snoRNA synthesis

21 January 2018

1 reference

Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

21 January 2018

1 reference

The Glc7 phosphatase subunit of the cleavage and polyadenylation factor is essential for transcription termination on snoRNA genes.

21 January 2018

1 reference

The essential N terminus of the Pta1 scaffold protein is required for snoRNA transcription termination and Ssu72 function but is dispensable for pre-mRNA 3'-end processing.

21 January 2018

1 reference

Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast

21 January 2018

1 reference

Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription

21 January 2018

1 reference

Saccharomyces cerevisiae RAI1 (YGL246c) is homologous to human DOM3Z and encodes a protein that binds the nuclear exoribonuclease Rat1p

21 January 2018

1 reference

The multifunctional protein p54nrb/PSF recruits the exonuclease XRN2 to facilitate pre-mRNA 3' processing and transcription termination

21 January 2018

1 reference

Cleavage/polyadenylation factor IA associates with the carboxyl-terminal domain of RNA polymerase II in Saccharomyces cerevisiae.

21 January 2018

1 reference

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

21 January 2018

1 reference

cis- and trans-Acting determinants of transcription termination by yeast RNA polymerase II

21 January 2018

1 reference

The Paf1 complex has functions independent of actively transcribing RNA polymerase II.

21 January 2018

1 reference

A Requirement for the Saccharomyces cerevisiae Paf1 complex in snoRNA 3' end formation

21 January 2018

1 reference

The long and short of RNAs

21 January 2018

1 reference

21 January 2018

The meaning of pausing

1 reference

Transcription attenuation: a highly conserved regulatory strategy used by bacteria

31 March 2020

1 reference

Transcription attenuation in bacteria: theme and variations

31 March 2020

1 reference

Transcriptional ShortCUTs

31 March 2020

1 reference

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex

31 March 2020

1 reference

Terminating transcription in yeast: whether to be a 'nerd' or a 'rat'

31 March 2020

1 reference

Pac1 endonuclease and Dhp1p 5'-->3' exonuclease are required for U3 snoRNA termination in Schizosaccharomyces pombe

31 March 2020

1 reference

A functional mRNA polyadenylation signal is required for transcription termination by RNA polymerase II

31 March 2020

1 reference

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

31 March 2020

1 reference

Control of eukaryotic gene expression: gene loops and transcriptional memory.

31 March 2020

1 reference

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

31 March 2020

1 reference

Regulation of yeast NRD1 expression by premature transcription termination

31 March 2020

1 reference

Structural and biochemical studies of the 5′→3′ exoribonuclease Xrn1

31 March 2020

1 reference

12 December 2020

Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda

1 reference

12 December 2020

Alpha-thalassaemia caused by a poly(A) site mutation reveals that transcriptional termination is linked to 3' end processing in the human alpha 2 globin gene

1 reference

12 December 2020

Rho-dependent transcription termination: more questions than answers

1 reference

12 December 2020

Identifiers

DOI

10.1038/NRM3098

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json

14 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json

14 May 2020

PubMed publication ID

21487437

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6995273&resulttype=core&format=json