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Rafael C. Jiménez
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2020 – today
- 2021
- [j23]Maria Victoria Schneider, Rafael C. Jiménez:
Corrigendum to: Bioinformatics: scalability, capabilities and training in the data-driven era. Briefings Bioinform. 22(1): 610 (2021) - 2020
- [j22]Leyla J. García
, Erick Antezana
Ten simple rules to run a successful BioHackathon. PLoS Comput. Biol. 16(5) (2020)
2010 – 2019
- 2019
- [j21]Daniel S. Katz
Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained. Comput. Sci. Eng. 21(2): 8-24 (2019) - 2018
- [c2]Mateusz Kuzak, Jen Harrow, Rafael C. Jiménez, Paula Andrea Martínez
Lesson Development for Open Source Software Best Practices Adoption. eScience 2018: 19-20 - [i10]Daniel S. Katz, Lois Curfman McInnes, David E. Bernholdt, Abigail Cabunoc Mayes, Neil P. Chue Hong, Jonah Duckles, Sandra Gesing, Michael A. Heroux, Simon Hettrick, Rafael C. Jiménez, Marlon E. Pierce, Belinda Weaver, Nancy Wilkins-Diehr:
Community Organizations: Changing the Culture in Which Research Software Is Developed and Sustained. CoRR abs/1811.08473 (2018) - [i9]Björn A. Grüning, Olivier Sallou, Pablo A. Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes L. Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R. Crusoe, Susheel Varma, Daniel J. Blankenberg, Rafael C. Jiménez, Daniel Blankenberg, Yasset Pérez-Riverol:
Recommendations for the packaging and containerizing of bioinformatics software. F1000Research 7: 742 (2018) - 2017
- [j20]Felipe da Veiga Leprevost
BioContainers: an open-source and community-driven framework for software standardization. Bioinform. 33(16): 2580-2582 (2017) - [j19]Carlos Horro
BioCIDER: a Contextualisation InDEx for biological Resources discovery. Bioinform. 33(16): 2607-2608 (2017) - [c1]Alasdair J. G. Gray, Carole A. Goble, Rafael C. Jiménez:
Bioschemas: From Potato Salad to Protein Annotation. ISWC (Posters, Demos & Industry Tracks) 2017 - [i8]Luís Bastião Silva
General guidelines for biomedical software development. F1000Research 6: 273- (2017) - [i7]Rafael C. Jiménez
Four simple recommendations to encourage best practices in research software. F1000Research 6: 876- (2017) - [i6]Merlijn N. van Rijswijk
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - [i5]Haydee Artaza
PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics. PeerJ Prepr. 5: e3112 (2017) - 2016
- [j18]Jon C. Ison
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [i4]Haydee Artaza
Top 10 metrics for life science software good practices. F1000Research 5: 2000 (2016) - 2015
- [j17]Jose M. Villaveces, Rafael C. Jiménez
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. Database J. Biol. Databases Curation 2015 (2015) - [j16]Manuel Corpas
The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinform. 31(1): 140-142 (2015) - 2014
- [j15]Sandra E. Orchard
The MIntAct project - IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res. 42(Database-Issue): 358-363 (2014) - [i3]John Gómez, Rafael C. Jiménez
Sequence, a BioJS component for visualising sequences. F1000Research 3: 52 (2014) - [i2]Anil S. Thanki, Rafael C. Jiménez, Gemy G. Kaithakottil, Manuel Corpas
wigExplorer, a BioJS component to visualise wig data. F1000Research 3: 53 (2014) - [i1]Manuel Corpas
BioJS: an open source standard for biological visualisation - its status in 2014. F1000Research 3: 55 (2014) - 2013
- [j14]Allegra Via, Thomas Blicher, Erik Bongcam-Rudloff, Michelle D. Brazas
Best practices in bioinformatics training for life scientists. Briefings Bioinform. 14(5): 528-537 (2013) - [j13]John Gómez, Leyla J. García
BioJS: an open source JavaScript framework for biological data visualization. Bioinform. 29(8): 1103-1104 (2013) - [j12]Rafael C. Jiménez
iAnn: an event sharing platform for the life sciences. Bioinform. 29(15): 1919-1921 (2013) - [j11]Noemi del-Toro
A new reference implementation of the PSICQUIC web service. Nucleic Acids Res. 41(Webserver-Issue): 601-606 (2013) - 2012
- [j10]Maria Victoria Schneider, Peter Walter, Marie-Claude Blatter, James Watson, Michelle D. Brazas
Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. Briefings Bioinform. 13(3): 383-389 (2012) - [j9]Samuel Kerrien
The IntAct molecular interaction database in 2012. Nucleic Acids Res. 40(Database-Issue): 841-846 (2012) - [j8]Maria Victoria Schneider
Teaching the Fundamentals of Biological Data Integration Using Classroom Games. PLoS Comput. Biol. 8(12) (2012) - 2011
- [j7]Jose M. Villaveces, Rafael C. Jiménez
Dasty3, a WEB framework for DAS. Bioinform. 27(18): 2616-2617 (2011) - [j6]Bernat Gel
easyDAS: Automatic creation of DAS servers. BMC Bioinform. 12: 23 (2011) - [j5]Gustavo A. Salazar
DAS Writeback: A Collaborative Annotation System. BMC Bioinform. 12: 143 (2011)
2000 – 2009
- 2008
- [j4]Rafael C. Jiménez
Dasty2, an Ajax protein DAS client. Bioinform. 24(18): 2119-2121 (2008) - [j3]Gabrielle A. Reeves
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinform. 24(23): 2767-2772 (2008) - [j2]Andrew M. Jenkinson
Integrating biological data - the Distributed Annotation System. BMC Bioinform. 9(S-8) (2008) - [j1]Kieran O'Neill
OntoDas - a tool for facilitating the construction of complex queries to the Gene Ontology. BMC Bioinform. 9 (2008)
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