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Marta Cascante
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2020 – today
- 2023
- [j23]Pedro de Atauri
, Carles Foguet
Control analysis in the identification of key enzymes driving metabolic adaptations: Towards drug target discovery. Biosyst. 231: 104984 (2023) - 2021
- [j22]Pedro de Atauri
Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PLoS Comput. Biol. 17(7) (2021)
2010 – 2019
- 2019
- [j21]Payam Emami Khoonsari, Pablo A. Moreno
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019) - [j20]Carles Foguet
p13CMFA: Parsimonious 13C metabolic flux analysis. PLoS Comput. Biol. 15(9) (2019) - 2018
- [j19]Igor Marín de Mas
Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j18]Igor Marín de Mas
Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. Bioinform. 33(1): 95-103 (2017) - [j17]Vitaly A. Selivanov, Adrián Benito
MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes. BMC Bioinform. 18(1): 88:1-88:9 (2017) - [i1]Merlijn N. van Rijswijk
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2016
- [j16]Ákos Tényi, Pedro de Atauri
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j15]Carles Foguet
HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j14]Michael Binns, Pedro de Atauri
Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes. BMC Bioinform. 16: 49:1-49:19 (2015) - 2014
- [j13]Shirley Guzmán, Silvia Marin
13C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in L6E9 myotubes. BMC Syst. Biol. 8: 109 (2014) - 2012
- [j12]Vitaly A. Selivanov
Multistationary and Oscillatory Modes of Free Radicals Generation by the Mitochondrial Respiratory Chain Revealed by a Bifurcation Analysis. PLoS Comput. Biol. 8(9) (2012) - 2011
- [j11]Jon Pey, Constantinos Theodoropoulos
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes. Biosyst. 105(2): 140-146 (2011) - [j10]Dieter Maier, Wenzel Kalus, Martin Wolff, Susana G. Kalko
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. BMC Syst. Biol. 5: 38 (2011) - [j9]Igor Marín de Mas
Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions. BMC Syst. Biol. 5: 175 (2011) - [j8]Vitaly A. Selivanov
Reactive Oxygen Species Production by Forward and Reverse Electron Fluxes in the Mitochondrial Respiratory Chain. PLoS Comput. Biol. 7(3) (2011) - [j7]Nil Turan, Susana G. Kalko
A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 7(9) (2011) - 2010
- [j6]Vitaly A. Selivanov
Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis. BMC Syst. Biol. 4: 135 (2010)
2000 – 2009
- 2009
- [j5]Vitaly A. Selivanov
Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia. PLoS Comput. Biol. 5(12) (2009) - 2007
- [j4]Julio Vera
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy. Bioinform. 23(17): 2281-2289 (2007) - 2006
- [j3]Vitaly A. Selivanov
Software for dynamic analysis of tracer-based metabolomic data: estimation of metabolic fluxes and their statistical analysis. Bioinform. 22(22): 2806-2812 (2006) - 2005
- [j2]Vitaly A. Selivanov
Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells. Bioinform. 21(17): 3558-3564 (2005) - 2004
- [j1]Vitaly A. Selivanov
An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites. Bioinform. 20(18): 3387-3397 (2004)
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