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Jan Stourac
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2020 – today
- 2025
- [j19]Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková:
Visual Support for the Loop Grafting Workflow on Proteins. IEEE Trans. Vis. Comput. Graph. 31(1): 580-590 (2025) - 2024
- [j18]Rayyan T. Khan, Petra Pokorna, Jan Stourac, Simeon Borko, Ihor Arefiev
, Joan Planas-Iglesias, Adam Dobias, Gaspar R. P. Pinto, Veronika Szotkowska, Jaroslav Sterba, Ondrej Slaby, Jirí Damborský, Stanislav Mazurenko, David Bednar:
A computational workflow for analysis of missense mutations in precision oncology. J. Cheminformatics 16(1): 86 (2024) - [j17]Ondrej Vavra, Jonathan D. Tyzack, Farzan Haddadi, Jan Stourac, Jirí Damborský, Stanislav Mazurenko, Janet M. Thornton, David Bednar:
Large-scale annotation of biochemically relevant pockets and tunnels in cognate enzyme-ligand complexes. J. Cheminformatics 16(1): 114 (2024) - [i2]Filip Opálený, Pavol Ulbrich, Joan Planas-Iglesias, Jan Byska, Jan Stourac, David Bednár, Katarína Furmanová, Barbora Kozlíková:
Visual Support for the Loop Grafting Workflow on Proteins. CoRR abs/2407.20054 (2024) - 2023
- [j16]Jan Stourac, Simeon Borko
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning. Briefings Bioinform. 25(1) (2023) - [j15]Ondrej Vavra, Jakub Beránek
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39(8) (2023) - 2022
- [j14]Mihaly Varadi
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - [j13]Antonin Kunka, David Lacko, Jan Stourac
CalFitter 2.0: Leveraging the power of singular value decomposition to analyse protein thermostability. Nucleic Acids Res. 50(W1): 145-151 (2022) - [j12]Joan Planas-Iglesias
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering. Nucleic Acids Res. 50(W1): 465-473 (2022) - 2021
- [j11]Jan Stourac
FireProtDB: database of manually curated protein stability data. Nucleic Acids Res. 49(Database-Issue): D319-D324 (2021) - 2020
- [j10]Jirí Hon
EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities. Nucleic Acids Res. 48(Webserver-Issue): W104-W109 (2020)
2010 – 2019
- 2019
- [j9]Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35(23): 4986-4993 (2019) - [j8]Jan Stourac
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic Acids Res. 47(Webserver-Issue): W414-W422 (2019) - 2018
- [j7]Adam Jurcík
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. Bioinform. 34(20): 3586-3588 (2018) - [j6]Stanislav Mazurenko
CalFitter: a web server for analysis of protein thermal denaturation data. Nucleic Acids Res. 46(Webserver-Issue): W344-W349 (2018) - [j5]Lenka Sumbalova, Jan Stourac
HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information. Nucleic Acids Res. 46(Webserver-Issue): W356-W362 (2018) - 2017
- [j4]Milos Musil, Jan Stourac
FireProt: web server for automated design of thermostable proteins. Nucleic Acids Res. 45(Webserver-Issue): W393-W399 (2017) - 2016
- [j3]Jaroslav Bendl
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering. Nucleic Acids Res. 44(Webserver-Issue): W479-W487 (2016) - [j2]Jaroslav Bendl, Milos Musil, Jan Stourac
PredictSNP2: A Unified Platform for Accurately Evaluating SNP Effects by Exploiting the Different Characteristics of Variants in Distinct Genomic Regions. PLoS Comput. Biol. 12(5) (2016) - [i1]Haydee Artaza
Top 10 metrics for life science software good practices. F1000Research 5: 2000 (2016) - 2014
- [j1]Jaroslav Bendl, Jan Stourac
PredictSNP: Robust and Accurate Consensus Classifier for Prediction of Disease-Related Mutations. PLoS Comput. Biol. 10(1) (2014)
Coauthor Index
aka: David Bednár
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