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Sébastien Moretti
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2020 – today
- 2024
- [i2]Jerven T. Bolleman, Vincent Emonet, Adrian M. Altenhoff, Amos Bairoch, Marie-Claude Blatter, Alan J. Bridge, Severine Duvaud, Elisabeth Gasteiger, Dmitry Kuznetsov, Sébastien Moretti, Pierre-André Michel, Anne Morgat, Marco Pagni, Nicole Redaschi, Monique Zahn-Zabal, Tarcisio Mendes de Farias, Ana Claudia Sima:
A large collection of bioinformatics question-query pairs over federated knowledge graphs: methodology and applications. CoRR abs/2410.06010 (2024) - 2021
- [j17]Sébastien Moretti
, T. Van Du Tran
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models. Nucleic Acids Res. 49(Database-Issue): D570-D574 (2021) - [j16]Frederic B. Bastian
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals. Nucleic Acids Res. 49(Database-Issue): D831-D847 (2021)
2010 – 2019
- 2019
- [j15]T. Van Du Tran
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis. Bioinform. 35(13): 2258-2266 (2019) - 2017
- [j14]Anne Morgat
Updates in Rhea - an expert curated resource of biochemical reactions. Nucleic Acids Res. 45(Database-Issue): D415-D418 (2017) - 2016
- [j13]Jon C. Ison
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [j12]Sébastien Moretti
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks. Nucleic Acids Res. 44(Database-Issue): 523-526 (2016) - 2014
- [j11]Thomas Bernard
Reconciliation of metabolites and biochemical reactions for metabolic networks. Briefings Bioinform. 15(1): 123-135 (2014) - [j10]Sébastien Moretti
Selectome update: quality control and computational improvements to a database of positive selection. Nucleic Acids Res. 42(Database-Issue): 917-921 (2014) - 2013
- [j9]Mathias Ganter, Thomas Bernard
MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks. Bioinform. 29(6): 815-816 (2013) - 2012
- [j8]Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi
ExPASy: SIB bioinformatics resource portal. Nucleic Acids Res. 40(Web-Server-Issue): 597-603 (2012) - [c4]Sébastien Moretti
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. HealthGrid 2012: 59-68 - [i1]Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger:
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution. CoRR abs/1203.3092 (2012) - 2011
- [j7]Paolo Di Tommaso
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39(Web-Server-Issue): 13-17 (2011) - 2010
- [c3]Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi
Phylogenetic Code in the Cloud - Can it Meet the Expectations? HealthGrid 2010: 55-63
2000 – 2009
- 2009
- [j6]Estelle Proux-Wéra
Selectome: a database of positive selection. Nucleic Acids Res. 37(Database-Issue): 404-407 (2009) - 2008
- [j5]Sébastien Moretti
R-Coffee: a web server for accurately aligning noncoding RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 10-13 (2008) - [c2]Frederic B. Bastian
Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species. DILS 2008: 124-131 - 2007
- [j4]Sébastien Moretti
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. Nucleic Acids Res. 35(Web-Server-Issue): 645-648 (2007) - 2006
- [j3]Fabrice Armougom, Olivier Poirot
APDB: a web server to evaluate the accuracy of sequence alignments using structural information. Bioinform. 22(19): 2439-2440 (2006) - [j2]Sébastien Moretti
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments. Nucleic Acids Res. 34(Web-Server-Issue): 600-603 (2006) - [j1]Fabrice Armougom, Sébastien Moretti
Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee. Nucleic Acids Res. 34(Web-Server-Issue): 604-608 (2006) - [c1]Fabrice Armougom, Sébastien Moretti
The iRMSD: a local measure of sequence alignment accuracy using structural information. ISMB (Supplement of Bioinformatics) 2006: 35-39
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