IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencing. (Q55514178)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29905763%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

IDP-denovo: de novo transcriptome assembly and isoform annotation by hybrid sequencing (English)

1 reference

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31 March 2020

0 references

Shuhua Fu

1 reference

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31 March 2020

Yingke Ma

1 reference

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31 March 2020

Hui Yao

1 reference

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31 March 2020

Jingyuan Song

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31 March 2020

Kin Fai Au

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31 March 2020

language of work or name

English

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publication date

1 July 2018

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31 March 2020

number of pages

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

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31 March 2020

volume

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31 March 2020

issue

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31 March 2020

page(s)

2168-2176

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Creative Commons Attribution 4.0 International

31 March 2020

start time

23 February 2018

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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15 July 2018

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Applications of next generation sequencing in molecular ecology of non-model organisms

15 July 2018

1 reference

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De novo assembly and analysis of RNA-seq data.

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Optimization of de novo transcriptome assembly from next-generation sequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Assembly algorithms for next-generation sequencing data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

mRNA-Seq whole-transcriptome analysis of a single cell

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

ABySS: a parallel assembler for short read sequence data

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Statistical inferences for isoform expression in RNA-Seq

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Harnessing genomics for evolutionary insights

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

RNA-Seq: a revolutionary tool for transcriptomics

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

The DNA sequence and biology of human chromosome 19

15 July 2018

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Large-scale analysis of the human and mouse transcriptomes

15 July 2018

1 reference

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An Eulerian path approach to DNA fragment assembly

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Clustering of highly homologous sequences to reduce the size of large protein databases

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Endogenously expressed estrogen receptor and coactivator AIB1 interact in MCF-7 human breast cancer cells

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

CAP3: A DNA sequence assembly program

15 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

Using viromes to predict novel immune proteins in non-model organisms.

15 July 2018

1 reference

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Splicing graphs and EST assembly problem

12 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6022631

10.1093/BIOINFORMATICS/BTY098

12 August 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29905763%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/FuMYXCSA18

31 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29905763%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

29905763

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29905763%20AND%20SRC:MED&resulttype=core&format=json