De novo assembly and analysis of RNA-seq data. (Q33714197)

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15 February 2020

title

De novo assembly and analysis of RNA-seq data (English)

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Readman Chiu

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Gordon Robertson

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Jacqueline Schein

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Richard Corbett

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Matthew Field

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Karen Mungall

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Sam Lee

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Hisanaga Mark Okada

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Jenny Q Qian

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Anthony Raymond

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Nina Thiessen

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Yaron S Butterfield

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Richard Newsome

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Simon K Chan

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Rong She

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Richard Varhol

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Baljit Kamoh

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Angela Tam

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YongJun Zhao

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Richard A Moore

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Martin Hirst

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Marco A Marra

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publication date

10 October 2010

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volume

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issue

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page(s)

909-912

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ASTD: The Alternative Splicing and Transcript Diversity database

15 February 2020

cites work

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12 December 2020

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

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12 December 2020

BLAT—The BLAST-Like Alignment Tool

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12 December 2020

Optimal spliced alignments of short sequence reads

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12 December 2020

Problems and solutions for estimating indel rates and length distributions

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12 December 2020

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing

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12 December 2020

Microindel detection in short-read sequence data

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12 December 2020

Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

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12 December 2020

TopHat: discovering splice junctions with RNA-Seq

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12 December 2020

Assembling genomes using short-read sequencing technology.

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12 December 2020

Alternative expression analysis by RNA sequencing

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12 December 2020

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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12 December 2020

Sense from sequence reads: methods for alignment and assembly

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12 December 2020

The transcriptional landscape of the yeast genome defined by RNA sequencing

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12 December 2020

Computation for ChIP-seq and RNA-seq studies

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12 December 2020

Comprehensive splice-site analysis using comparative genomics

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12 December 2020

The UCSC Genome Browser database: update 2010

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12 December 2020

RNA-Seq gene expression estimation with read mapping uncertainty

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12 December 2020

ABySS: a parallel assembler for short read sequence data

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12 December 2020

Fast and SNP-tolerant detection of complex variants and splicing in short reads

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12 December 2020

Modeling non-uniformity in short-read rates in RNA-Seq data

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12 December 2020

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

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12 December 2020

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12 December 2020

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

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12 December 2020

Stochastic noise in splicing machinery

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12 December 2020

De novo transcriptome assembly with ABySS.

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12 December 2020

Fast and accurate short read alignment with Burrows-Wheeler transform

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12 December 2020

Automated generation of heuristics for biological sequence comparison

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12 December 2020

How to map billions of short reads onto genomes

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12 December 2020

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12 December 2020

Global and unbiased detection of splice junctions from RNA-seq data

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12 December 2020

Identifiers

DOI

10.1038/NMETH.1517

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Dimensions Publication ID

15 February 2020

1032102367

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