HISAT: a fast spliced aligner with low memory requirements (Q34043398)

30 July 2017

title

HISAT: a fast spliced aligner with low memory requirements (English)

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30 July 2017

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30 July 2017

Ben Langmead

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30 July 2017

Daehwan Kim

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30 July 2017

language of work or name

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9 March 2015

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

357-360

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Systematic evaluation of spliced alignment programs for RNA-seq data

30 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

STAR: ultrafast universal RNA-seq aligner

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Modelling and simulating generic RNA-Seq experiments with the flux simulator

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Personal omics profiling reveals dynamic molecular and medical phenotypes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Fast gapped-read alignment with Bowtie 2

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Computational methods for transcriptome annotation and quantification using RNA-seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Fast and SNP-tolerant detection of complex variants and splicing in short reads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Mapping and quantifying mammalian transcriptomes by RNA-Seq

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4655817

28 October 2018

Identifiers

DOI

10.1038/NMETH.3317

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Dimensions Publication ID

30 July 2017

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30 July 2017

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