Velvet: algorithms for de novo short read assembly using de Bruijn graphs (Q24657623)

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English	Velvet: algorithms for de novo short read assembly using de Bruijn graphs	scientific article

Statements

instance of

scholarly article

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title

Velvet: algorithms for de novo short read assembly using de Bruijn graphs (English)

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main subject

algorithm

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author

Ewan Birney

series ordinal

2

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Daniel R Zerbino

series ordinal

1

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language of work or name

English

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publication date

May 2008

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published in

Genome Research

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volume

18

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issue

5

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page(s)

821-9

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cites work

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Genome sequencing in microfabricated high-density picolitre reactors

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Automated generation of heuristics for biological sequence comparison

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

ARACHNE: a whole-genome shotgun assembler

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

An Eulerian path approach to DNA fragment assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Initial sequencing and analysis of the human genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Initial sequencing and comparative analysis of the mouse genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

The Sequence of the Human Genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Genomic mapping by fingerprinting random clones: a mathematical analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Genome-wide mapping of in vivo protein-DNA interactions

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

A whole-genome assembly of Drosophila

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

7 April 2017

Whole-genome sequencing and assembly with high-throughput, short-read technologies

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

Whole-genome re-sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

Emerging technologies in DNA sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

The Atlas genome assembly system

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

PCAP: a whole-genome assembly program

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

The phusion assembler

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

A new algorithm for DNA sequence assembly

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 September 2017

The fragment assembly string graph

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

30 May 2018

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 November 2018

Extending assembly of short DNA sequences to handle error.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 November 2018

Assembling millions of short DNA sequences using SSAKE.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 November 2018

A parallel graph decomposition algorithm for DNA sequencing with nanopores

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 November 2018

Fragment assembly with short reads

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2336801

retrieved

28 November 2018

Identifiers

DOI

10.1101/GR.074492.107

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

89965

Fatcat ID

release_lvqrbe7dezgbjlradj4ltwxcka

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stated in

Fatcat

reference URL

https://api.fatcat.wiki/v0/release/lvqrbe7dezgbjlradj4ltwxcka

retrieved

24 November 2022

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mapped directly with Wikidata item

OpenCitations bibliographic resource ID

89965

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

89965

PMC publication ID

2336801

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

89965

PubMed publication ID

18349386

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

89965

ResearchGate publication ID

5503854

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