Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect. (Q41692191)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28934948%20AND%20SRC:MED&resulttype=core&format=json

30 March 2020

title

Multi-breed genomic prediction using Bayes R with sequence data and dropping variants with a small effect (English)

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30 March 2020

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30 March 2020

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30 March 2020

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30 March 2020

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30 March 2020

Phil J Bowman

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30 March 2020

Iona M MacLeod

series ordinal

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30 March 2020

Sunduimijid Bolormaa

series ordinal

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30 March 2020

publication date

21 September 2017

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Genetics Selection Evolution

30 March 2020

published in

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30 March 2020

volume

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30 March 2020

issue

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30 March 2020

page(s)

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Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture

30 March 2020

cites work

1 reference

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Genomic prediction using preselected DNA variants from a GWAS with whole-genome sequence data in Holstein-Friesian cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Sequence variants selected from a multi-breed GWAS can improve the reliability of genomic predictions in dairy cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Using Sequence Variants in Linkage Disequilibrium with Causative Mutations to Improve Across-Breed Prediction in Dairy Cattle: A Simulation Study

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Exploiting biological priors and sequence variants enhances QTL discovery and genomic prediction of complex traits.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Review: How to improve genomic predictions in small dairy cattle populations

6 June 2018

1 reference

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Accuracy of genomic prediction using imputed whole-genome sequence data in white layers.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Accounting for genetic architecture improves sequence based genomic prediction for a Drosophila fitness trait

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

A computationally efficient algorithm for genomic prediction using a Bayesian model

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Improved precision of QTL mapping using a nonlinear Bayesian method in a multi-breed population leads to greater accuracy of across-breed genomic predictions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

A new approach for efficient genotype imputation using information from relatives

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Deregressing estimated breeding values and weighting information for genomic regression analyses

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Development and characterization of a high density SNP genotyping assay for cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

PLINK: a tool set for whole-genome association and population-based linkage analyses

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5609075

10.1186/S12711-017-0347-9

18 August 2018

Identifiers

DOI

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Dimensions Publication ID

30 March 2020

0 references

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30 March 2020

PubMed publication ID

28934948

1 reference

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