Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection. (Q31111344)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27357580%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

Efficient genomic prediction based on whole-genome sequence data using split-and-merge Bayesian variable selection (English)

1 reference

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17 March 2020

main subject

whole genome sequencing

1 reference

1 reference

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17 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27357580%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

Chris Schrooten

1 reference

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17 March 2020

Roel F Veerkamp

series ordinal

1 reference

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17 March 2020

publication date

29 June 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27357580%20AND%20SRC:MED&resulttype=core&format=json

Genetics Selection Evolution

17 March 2020

published in

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17 March 2020

volume

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17 March 2020

issue

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17 March 2020

page(s)

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Accuracy of genomic prediction using imputed whole-genome sequence data in white layers.

17 March 2020

cites work

1 reference

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Across population genomic prediction scenarios in which Bayesian variable selection outperforms GBLUP

21 June 2018

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Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle

21 June 2018

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Selection of haplotype variables from a high-density marker map for genomic prediction

21 June 2018

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Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

21 June 2018

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Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction.

21 June 2018

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minimac2: faster genotype imputation

21 June 2018

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Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy

21 June 2018

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The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data

21 June 2018

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Strategies for imputation to whole genome sequence using a single or multi-breed reference population in cattle

21 June 2018

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Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

21 June 2018

1 reference

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Right-hand-side updating for fast computing of genomic breeding values

21 June 2018

1 reference

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Genome-wide complex trait analysis (GCTA): methods, data analyses, and interpretations

21 June 2018

1 reference

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Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions.

21 June 2018

1 reference

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Development of a high density 600K SNP genotyping array for chicken

21 June 2018

1 reference

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Whole-genome regression and prediction methods applied to plant and animal breeding

21 June 2018

1 reference

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A Bayesian antedependence model for whole genome prediction

21 June 2018

1 reference

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Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

The development and characterization of a 60K SNP chip for chicken.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Extension of the bayesian alphabet for genomic selection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Different models of genetic variation and their effect on genomic evaluation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Accurate prediction of genetic values for complex traits by whole-genome resequencing

21 June 2018

1 reference

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Persistence of accuracy of genome-wide breeding values over generations when including a polygenic effect

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Reliability of genomic predictions across multiple populations.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Additive genetic variability and the Bayesian alphabet

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Mathematical properties of the r2 measure of linkage disequilibrium

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

21 June 2018

1 reference

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Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat content

21 June 2018

1 reference

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Prediction of total genetic value using genome-wide dense marker maps

21 June 2018

1 reference

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Gametic disequilibrium measures: proceed with caution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4926307

Genomic analysis of the major bovine milk protein genes

21 June 2018

1 reference

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Model comparison on genomic predictions using high-density markers for different groups of bulls in the Nordic Holstein population

21 June 2018

1 reference

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Weighting factors of sire daughter information in international genetic evaluations.

21 January 2018

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Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

21 January 2018

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Bayesian inference in threshold models using Gibbs sampling

21 January 2018

1 reference

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Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12711-016-0225-X

10.1186/S12711-016-0225-X

21 January 2018

Identifiers

DOI

1 reference

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Dimensions Publication ID

17 March 2020

0 references

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17 March 2020

PubMed publication ID

27357580

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27357580%20AND%20SRC:MED&resulttype=core&format=json