Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture (Q37587796)

From Wikidata

Jump to navigation Jump to search

scientific article published on 16 January 2017

Language	Label	Description	Also known as
English	Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture	scientific article published on 16 January 2017

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Whole-genome sequence-based genomic prediction in laying chickens with different genomic relationship matrices to account for genetic architecture (English)

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

whole genome sequencing

1 reference

based on heuristic

inferred from title

author name string

Guiyan Ni

1

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

David Cavero

2

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Anna Fangmann

3

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Malena Erbe

4

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Henner Simianer

5

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

16 January 2017

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Genetics Selection Evolution

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

49

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

1

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

8

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Accuracy of genomic prediction using imputed whole-genome sequence data in white layers.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Quantitative trait loci markers derived from whole genome sequence data increases the reliability of genomic prediction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

The effect of rare alleles on estimated genomic relationships from whole genome sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Accuracy of whole-genome prediction using a genetic architecture-enhanced variance-covariance matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Performance of genotype imputation for low frequency and rare variants from the 1000 genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Systematic assessment of imputation performance using the 1000 Genomes reference panels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

The effects of demography and long-term selection on the accuracy of genomic prediction with sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Genomic relationships based on X chromosome markers and accuracy of genomic predictions with and without X chromosome markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Impact of genotype imputation on the performance of GBLUP and Bayesian methods for genomic prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Regulatory and coding genome regions are enriched for trait associated variants in dairy and beef cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Genome-enabled prediction of quantitative traits in chickens using genomic annotation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Prediction of complex human traits using the genomic best linear unbiased predictor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Development of a high density 600K SNP genotyping array for chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Genomic prediction in animals and plants: simulation of data, validation, reporting, and benchmarking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Deregressing estimated breeding values and weighting information for genomic regression analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Invited review: Genomic selection in dairy cattle: progress and challenges

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Invited review: reliability of genomic predictions for North American Holstein bulls.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Genome-wide assessment of worldwide chicken SNP genetic diversity indicates significant absence of rare alleles in commercial breeds.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Global variation in copy number in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Principal components analysis corrects for stratification in genome-wide association studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

The Ensembl automatic gene annotation system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Prediction of total genetic value using genome-wide dense marker maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Chicken microchromosomes are hyperacetylated, early replicating, and gene rich

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

23 August 2017

Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

6 September 2017

Sequence- vs. chip-assisted genomic selection: accurate biological information is advised.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

14 September 2017

Assessment of bagging GBLUP for whole-genome prediction of broiler chicken traits.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

28 September 2017

SNP annotation-based whole genomic prediction and selection: an application to feed efficiency and its component traits in pigs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

25 June 2018

Breeding and Genetics Symposium: networks and pathways to guide genomic selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

25 June 2018

Comparison of genomic predictions using genomic relationship matrices built with different weighting factors to account for locus-specific variances

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Genomic predictions across Nordic Holstein and Nordic Red using the genomic best linear unbiased prediction model with different genomic relationship matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Genome-wide prediction of traits with different genetic architecture through efficient variable selection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Comparison of different methods for imputing genome-wide marker genotypes in Swedish and Finnish Red Cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Reliability of genomic prediction for German Holsteins using imputed genotypes from low-density chips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Methods for testing association between uncertain genotypes and quantitative traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Efficient methods to compute genomic predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Common deletion polymorphisms in the human genome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

DGAT1, a new positional and functional candidate gene for intramuscular fat deposition in cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5238523

1 September 2018

Whole-genome sequencing and comprehensive variant analysis of a Japanese individual using massively parallel sequencing

1 reference

https://api.crossref.org/works/10.1186%2FS12711-016-0277-Y

21 January 2018

Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs

1 reference

https://api.crossref.org/works/10.1186%2FS12711-016-0277-Y

21 January 2018

Towards sequence-based genomic selection of cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/28093063

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12711-016-0277-Y

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q37587796&oldid=2200585038"