Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize (Q41591232)

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scientific article published on 6 September 2017

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English	Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize	scientific article published on 6 September 2017

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scholarly article

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Europe PubMed Central

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4 October 2017

Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize (English)

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4 October 2017

genetic diversity

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James C Schnable

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4 October 2017

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Xianjun Lai

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4 October 2017

Zhengqiao Liao

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4 October 2017

Jie Xu

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4 October 2017

Gengyun Zhang

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Chuan Li

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4 October 2017

Erliang Hu

7

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Tingzhao Rong

8

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4 October 2017

Yunbi Xu

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Yanli Lu

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6 September 2017

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4 October 2017

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4 October 2017

1

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702

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4 October 2017

Genome-wide characterization of non-reference transposons in crops suggests non-random insertion

1 reference

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Natural variation in teosinte at the domestication locus teosinte branched1 (tb1).

1 reference

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6 June 2018

Genomic, Transcriptomic, and Phenomic Variation Reveals the Complex Adaptation of Modern Maize Breeding

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6 June 2018

Transposable elements contribute to activation of maize genes in response to abiotic stress

1 reference

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QST-FST comparisons with unbalanced half-sib designs

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A MITE transposon insertion is associated with differential methylation at the maize flowering time QTL Vgt1.

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6 June 2018

Evolution of crop species: genetics of domestication and diversification

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CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize

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Utilization of transposable element mPing as a novel genetic tool for modification of the stress response in rice

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How important are transposons for plant evolution?

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Comparative population genomics of maize domestication and improvement

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Maize HapMap2 identifies extant variation from a genome in flux.

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Preceramic maize from Paredones and Huaca Prieta, Peru

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Comparative SNP and haplotype analysis reveals a higher genetic diversity and rapider LD decay in tropical than temperate germplasm in maize

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6 June 2018

Identification of a functional transposon insertion in the maize domestication gene tb1.

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6 June 2018

Epigenetic contribution to stress adaptation in plants

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6 June 2018

Whole-genome resequencing allows detection of many rare LINE-1 insertion alleles in humans

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6 June 2018

Transcriptional activity of transposable elements in maize

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5588714

6 June 2018

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

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6 June 2018

Haploview: Visualization and analysis of SNP genotype data

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Genetic characterization and linkage disequilibrium estimation of a global maize collection using SNP markers

1 reference

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Genetic Control of Photoperiod Sensitivity in Maize Revealed by Joint Multiple Population Analysis

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The B73 Maize Genome: Complexity, Diversity, and Dynamics

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Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons

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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome

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Transposable elements in gene regulation and in the evolution of vertebrate genomes

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Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

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Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico

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Physical and genetic structure of the maize genome reflects its complex evolutionary history

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Maize genetic diversity and association mapping using transposable element insertion polymorphisms

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Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

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10.1186/S12864-017-4103-X

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Europe PubMed Central

PMC publication ID

4 October 2017

Dimensions Publication ID

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9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-4103-x

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

4 October 2017

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