How important are transposons for plant evolution? (Q38068090)

28 August 2017

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title

How important are transposons for plant evolution? (English)

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28 August 2017

Damon Lisch

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28 August 2017

publication date

1 January 2013

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28 August 2017

published in

Nature Reviews Genetics

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28 August 2017

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28 August 2017

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28 August 2017

page(s)

49-61

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Mechanisms of recent genome size variation in flowering plants

28 August 2017

cites work

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Give-and-take: interactions between DNA transposons and their host plant genomes

21 January 2018

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Transposable elements and the evolution of regulatory networks

21 January 2018

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The evolutionary dynamics of transposable elements in eukaryote genomes

21 January 2018

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Sequence-indexed mutations in maize using the UniformMu transposon-tagging population.

21 January 2018

1 reference

Robertson's Mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1).

21 January 2018

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Bursts of retrotransposition reproduced in Arabidopsis

21 January 2018

1 reference

Transpositional reactivation of two LTR retrotransposons in rice-Zizania recombinant inbred lines (RILs)

21 January 2018

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The significance of responses of the genome to challenge

21 January 2018

1 reference

Dramatic amplification of a rice transposable element during recent domestication

21 January 2018

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Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation.

21 January 2018

1 reference

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

21 January 2018

1 reference

Turned on by stress. Plant retrotransposons

21 January 2018

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Potential impact of stress activated retrotransposons on genome evolution in a marine diatom

21 January 2018

1 reference

Genomic amplification of the Gret1 retroelement in white-fruited accessions of wild vitis and interspecific hybrids

21 January 2018

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Pink-colored grape berry is the result of short insertion in intron of color regulatory gene

21 January 2018

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Tracing floral adaptations from ecology to molecules

21 January 2018

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Flower color variation: a model for the experimental study of evolution

21 January 2018

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A bHLH regulatory gene in the common morning glory, Ipomoea purpurea, controls anthocyanin biosynthesis in flowers, proanthocyanidin and phytomelanin pigmentation in seeds, and seed trichome formation

21 January 2018

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The molecular genetics of crop domestication

21 January 2018

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Molecular and cellular mechanisms of diversity within grapevine varieties

21 January 2018

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DNA changes tell us about rice domestication

21 January 2018

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Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants

21 January 2018

1 reference

Natural variation in Arabidopsis: from molecular genetics to ecological genomics

21 January 2018

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Advances in plant genome sequencing

21 January 2018

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Genetic variation in rice

21 January 2018

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A map of rice genome variation reveals the origin of cultivated rice

21 January 2018

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Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

21 January 2018

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Two evolutionary histories in the genome of rice: the roles of domestication genes

21 January 2018

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Transposon-induced promoter scrambling: a mechanism for the evolution of new alleles

21 January 2018

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Homologies in leaf form inferred from KNOXI gene expression during development

21 January 2018

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Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize

21 January 2018

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Maize HapMap2 identifies extant variation from a genome in flux.

21 January 2018

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Conserved noncoding sequences (CNSs) in higher plants

21 January 2018

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Mu transposon insertion sites and meiotic recombination events co-localize with epigenetic marks for open chromatin across the maize genome

21 January 2018

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Genome-wide distribution of transposed Dissociation elements in maize.

21 January 2018

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Site preferences of insertional mutagenesis agents in Arabidopsis.

21 January 2018

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Genetic and developmental control of anthocyanin biosynthesis

21 January 2018

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Major recent and independent changes in levels and patterns of expression have occurred at the b gene, a regulatory locus in maize

21 January 2018

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Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges

21 January 2018

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Identification of a functional transposon insertion in the maize domestication gene tb1.

21 January 2018

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The promoter of the tobacco Tnt1 retrotransposon is induced by wounding and by abiotic stress.

21 January 2018

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Genotype-dependent transcriptional activation of novel repetitive elements during cold acclimation of alfalfa (Medicago sativa).

21 January 2018

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An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.

21 January 2018

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Stress activation and genomic impact of Tnt1 retrotransposons in Solanaceae

21 January 2018

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Geminivirus AL2 and L2 proteins suppress transcriptional gene silencing and cause genome-wide reductions in cytosine methylation

21 January 2018

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Dynamic evolution of bz orthologous regions in the Andropogoneae and other grasses

21 January 2018

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Close split of sorghum and maize genome progenitors

21 January 2018

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Genome Rearrangements in Maize Induced by Alternative Transposition of ReversedAc/DsTermini

21 January 2018

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Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes

21 January 2018

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Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution

21 January 2018

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Chromosomal rearrangements maintain a polymorphic supergene controlling butterfly mimicry.

21 January 2018

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A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition, Local Adaptation, and Reproductive Isolation

21 January 2018

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Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

21 January 2018

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Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

21 January 2018

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Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice

21 January 2018

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The Palomero genome suggests metal effects on domestication

21 January 2018

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The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

21 January 2018

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Transposed genes in Arabidopsis are often associated with flanking repeats

21 January 2018

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Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila

21 January 2018

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Genome-scale analysis of positionally relocated genes

21 January 2018

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Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication.

21 January 2018

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High-resolution fine mapping and fluorescence in situ hybridization analysis of sun, a locus controlling tomato fruit shape, reveals a region of the tomato genome prone to DNA rearrangements

21 January 2018

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A retrotransposon-mediated gene duplication underlies morphological variation of tomato fruit

21 January 2018

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Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

21 January 2018

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Mutations in retrotransposon AtCOPIA4 compromises resistance to Hyaloperonospora parasitica in Arabidopsis thaliana

21 January 2018

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A cluster of disease resistance genes in Arabidopsis is coordinately regulated by transcriptional activation and RNA silencing

21 January 2018

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Pack-MULE transposable elements mediate gene evolution in plants

21 January 2018

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The evolutionary fate of MULE-mediated duplications of host gene fragments in rice

21 January 2018

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The functional role of pack-MULEs in rice inferred from purifying selection and expression profile

21 January 2018

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High rate of chimeric gene origination by retroposition in plant genomes

21 January 2018

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A hAT superfamily transposase recruited by the cereal grass genome

21 January 2018

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The FHY3 and FAR1 genes encode transposase‐related proteins involved in regulation of gene expression by the phytochrome A‐signaling pathway

21 January 2018

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Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis.

21 January 2018

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Transposase-derived transcription factors regulate light signaling in Arabidopsis

21 January 2018

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Genome-wide binding site analysis of FAR-RED ELONGATED HYPOCOTYL3 reveals its novel function in Arabidopsis development

21 January 2018

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A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana

21 January 2018

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MUSTANG is a novel family of domesticated transposase genes found in diverse angiosperms

21 January 2018

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An Arabidopsis hAT-like transposase is essential for plant development.

21 January 2018

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Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana.

21 January 2018

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Estimates of the genomic mutation rate for detrimental alleles in Drosophila melanogaster

21 January 2018

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The ecology of the genome - mobile DNA elements and their hosts

21 January 2018

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Epigenetic regulation of transposable elements in plants

21 January 2018

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Transposable elements and the epigenetic regulation of the genome

21 January 2018

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Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.

21 January 2018

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Evolution and control of imprinted FWA genes in the genus Arabidopsis

21 January 2018

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Maintenance of genomic methylation requires a SWI2/SNF2-like protein

21 January 2018

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Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1.

21 January 2018

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siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

21 January 2018

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Major-effect alleles at relatively few loci underlie distinct vernalization and flowering variation in Arabidopsis accessions

21 January 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

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Extensive demethylation of repetitive elements during seed development underlies gene imprinting

21 January 2018

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Local DNA hypomethylation activates genes in rice endosperm

21 January 2018

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Dasheng and RIRE2. A nonautonomous long terminal repeat element and its putative autonomous partner in the rice genome

21 January 2018

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Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza.

21 January 2018

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Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.

21 January 2018

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Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids

21 January 2018

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Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

21 January 2018

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Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

21 January 2018

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Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa

21 January 2018

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Phenomics--technologies to relieve the phenotyping bottleneck.

21 January 2018

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Genome-wide association studies in plants: the missing heritability is in the field

21 January 2018

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The flowering world: a tale of duplications

21 January 2018

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Toward positional cloning of Vgt1, a QTL controlling the transition from the vegetative to the reproductive phase in maize

21 January 2018

2 references

https://pubmed.ncbi.nlm.nih.gov/23247435

21 January 2018

12 December 2020

inferred from PubMed ID database lookup

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

1 reference

The art and design of genetic screens: maize.

21 January 2018

1 reference

A rice gene activation/knockout mutant resource for high throughput functional genomics

31 March 2020

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Dramatic genotypic difference in, and effect of genetic crossing on, tissue culture-induced mobility of retrotransposon Tos17 in rice

31 March 2020

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Diverse origins of waxy foxtail millet crops in East and Southeast Asia mediated by multiple transposable element insertions

31 March 2020

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The wrinkled-seed character of pea described by Mendel is caused by a transposon-like insertion in a gene encoding starch-branching enzyme

31 March 2020

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Retrotransposon-induced mutations in grape skin color

31 March 2020

1 reference

31 March 2020

1 reference

B-Bolivia, an allele of the maize b1 gene with variable expression, contains a high copy retrotransposon-related sequence immediately upstream

31 March 2020

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Transposon-mediated chromosomal rearrangements and gene duplications in the formation of the maize R-r complex

31 March 2020

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Halfway point for 1,001 genomes quest

31 March 2020

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The polychromatic Helitron landscape of the maize genome

31 March 2020

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Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

31 March 2020

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Repetitive DNA and next-generation sequencing: computational challenges and solutions

31 March 2020

1 reference

Parthenocarpic apple fruit production conferred by transposon insertion mutations in a MADS-box transcription factor.

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23247435

12 December 2020

inferred from PubMed ID database lookup

Mutator insertions in an intron of the maize knotted1 gene result in dominant suppressible mutations.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23247435

12 December 2020

inferred from PubMed ID database lookup

Using RepeatMasker to identify repetitive elements in genomic sequences

1 reference

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NRG3374

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Dimensions Publication ID

28 August 2017

1041941568

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