Advances in plant genome sequencing (Q37997072)

26 August 2017

title

Advances in plant genome sequencing (English)

1 reference

26 August 2017

main subject

whole genome sequencing

1 reference

John P Hamilton

0 references

C Robin Buell

1 reference

26 August 2017

publication date

1 April 2012

1 reference

26 August 2017

1 reference

26 August 2017

1 reference

26 August 2017

1 reference

26 August 2017

page(s)

177-190

1 reference

Rapid cDNA sequencing (expressed sequence tags) from a directionally cloned human infant brain cDNA library

26 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome sequence of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Galaxy CloudMan: delivering cloud compute clusters

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

BAC libraries of Triticum urartu, Aegilops speltoides and Ae. tauschii, the diploid ancestors of polyploid wheat

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of Theobroma cacao

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Maternal epigenetic pathways control parental contributions to Arabidopsis early embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Transcriptome characterization and polymorphism detection between subspecies of big sagebrush (Artemisia tridentata)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

21 January 2018

Building the TeraGrid

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Comparisons with Caenorhabditis (approximately 100 Mb) and Drosophila (approximately 175 Mb) using flow cytometry show genome size in Arabidopsis to be approximately 157 Mb and thus approximately 25% larger than the Arabidopsis genome initiative est

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Accurate whole human genome sequencing using reversible terminator chemistry

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of the mesopolyploid crop species Brassica rapa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Studies on nucleic acid reassociation kinetics: empirical equations describing DNA reassociation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Whole-genome sequencing of multiple Arabidopsis thaliana populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Draft genome sequence of the oilseed species Ricinus communis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Accessing genetic information with high-density DNA arrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of the extremophile crucifer Thellungiella parvula

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Transcriptomic analysis of grain amaranth (Amaranthus hypochondriacus) using 454 pyrosequencing: comparison with A. tuberculatus, expression profiling in stems and in response to biotic and abiotic stress

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The DNA sequence of human chromosome 22

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Minimal Gene Complement of Mycoplasma genitalium

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation Sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Arabidopsis lyrata genome sequence and the basis of rapid genome size change

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of the cucumber, Cucumis sativus L

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

High-throughput genotyping by whole-genome resequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The map-based sequence of the rice genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genome-wide patterns of genetic variation among elite maize inbred lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Initial sequencing and analysis of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Searching for SNPs with cloud computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Cloud-scale RNA-sequencing differential expression analysis with Myrna

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The use of MPSS for whole-genome transcriptional analysis in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Analysis of the transcriptional complexity of Arabidopsis thaliana by massively parallel signature sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

An expression atlas of rice mRNAs and small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sequence-based physical mapping of complex genomes by whole genome profiling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sequencing of natural strains of Arabidopsis thaliana with short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Sorghum bicolor genome and the diversification of grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

A physical map of the 1-gigabase bread wheat chromosome 3B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genome sequence and analysis of the tuber crop potato

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Differential methylation of genes and retrotransposons facilitates shotgun sequencing of the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

De novo assembly and analysis of RNA-seq data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

CloudBurst: highly sensitive read mapping with MapReduce

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Genome sequence of the palaeopolyploid soybean

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The B73 Maize Genome: Complexity, Diversity, and Dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

SHOREmap: simultaneous mapping and mutation identification by deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of woodland strawberry (Fragaria vesca)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Transcriptome Analysis of Sarracenia, an Insectivorous Plant

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The case for cloud computing in genome informatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

An efficient approach to finding Siraitia grosvenorii triterpene biosynthetic genes by RNA-seq and digital gene expression analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

TopHat: discovering splice junctions with RNA-Seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Comparative deep transcriptional profiling of four developing oilseeds

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Sequence of the Human Genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Alternative isoform regulation in human tissue transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Enrichment of gene-coding sequences in maize by genome filtration

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Genome Sequence of the North-European Cucumber (Cucumis sativus L.) Unravels Evolutionary Adaptation Mechanisms in Plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Intergenic locations of rice centromeric chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Epigenetic modification of centromeric chromatin: hypomethylation of DNA sequences in the CENH3-associated chromatin in Arabidopsis thaliana and maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

A single molecule scaffold for the maize genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

Utility of RNA Sequencing for Analysis of Maize Reproductive Transcriptomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-313X.2012.04894.X

The Medicago genome provides insight into the evolution of rhizobial symbioses

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.1038/NATURE10625

10.1111/J.1365-313X.2012.04894.X

15 July 2023

Identifiers

DOI

1 reference

26 August 2017

1 reference