Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study (Q34177228)

31 July 2017

title

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study (English)

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31 July 2017

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Qiong-Yi Zhao

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Yi Wang

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31 July 2017

Yi-Meng Kong

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31 July 2017

Da Luo

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31 July 2017

Xuan Li

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31 July 2017

Pei Hao

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31 July 2017

publication date

14 December 2011

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31 July 2017

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31 July 2017

volume

12 Suppl 14

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31 July 2017

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De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

31 July 2017

cites work

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

5 July 2018

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Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds.

5 July 2018

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De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

5 July 2018

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5 July 2018

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De novo assembly and analysis of RNA-seq data.

5 July 2018

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Optimization of de novo transcriptome assembly from next-generation sequencing data

5 July 2018

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De novo characterization of a whitefly transcriptome and analysis of its gene expression during development.

5 July 2018

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De novo transcriptome assembly with ABySS.

5 July 2018

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SOAP2: an improved ultrafast tool for short read alignment

5 July 2018

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TopHat: discovering splice junctions with RNA-Seq

5 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

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Transcriptome sequencing to detect gene fusions in cancer

5 July 2018

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

5 July 2018

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5 July 2018

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The KEGG resource for deciphering the genome

5 July 2018

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BLAT—The BLAST-Like Alignment Tool

5 July 2018

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The developmental dynamics of the maize leaf transcriptome

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2F1471-2105-12-S14-S2

10.1186/1471-2105-12-S14-S2

21 January 2018

Identifiers

DOI

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journals/bmcbi/ZhaoWKLLH11

31 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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31 July 2017

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