Next-generation transcriptome assembly (Q34012644)

30 July 2017

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title

Next-generation transcriptome assembly (English)

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30 July 2017

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Jeffrey A Martin

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30 July 2017

Zhong Wang

series ordinal

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30 July 2017

publication date

7 September 2011

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30 July 2017

published in

Nature Reviews Genetics

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

671-682

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RNA sequencing: advances, challenges and opportunities

30 July 2017

cites work

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De novo assembly of short sequence reads

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Properties of overlapping genes are conserved across microbial genomes

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Comprehensive comparative analysis of strand-specific RNA sequencing methods

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Ribosomal RNA Depletion for Massively Parallel Bacterial RNA-Sequencing Applications

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Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes

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A comparison of single molecule and amplification based sequencing of cancer transcriptomes

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SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read

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TagDust--a program to eliminate artifacts from next generation sequencing data

31 March 2020

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BLAT—The BLAST-Like Alignment Tool

31 March 2020

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TopHat: discovering splice junctions with RNA-Seq

31 March 2020

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Detection of splice junctions from paired-end RNA-seq data by SpliceMap.

31 March 2020

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Beware of mis-assembled genomes

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Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs

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Distinct classes of chromosomal rearrangements create oncogenic ETS gene fusions in prostate cancer

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An Eulerian path approach to DNA fragment assembly

31 March 2020

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

31 March 2020

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Analysis of canonical and non-canonical splice sites in mammalian genomes

31 March 2020

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Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

31 March 2020

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Reverse transcriptase template switching and false alternative transcripts.

31 March 2020

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Advancing RNA-Seq analysis

31 March 2020

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A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America

31 March 2020

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Massive parallel sequencing of mRNA in identification of unannotated salinity stress-inducible transcripts in rice (Oryza sativa L.).

31 March 2020

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Whole transcriptome sequencing reveals gene expression and splicing differences in brain regions affected by Alzheimer's disease

31 March 2020

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Genome assembly quality: assessment and improvement using the neutral indel model

31 March 2020

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Revolutions in rapid amplification of cDNA ends: new strategies for polymerase chain reaction cloning of full-length cDNA ends

31 March 2020

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An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics

31 March 2020

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Real-time DNA sequencing from single polymerase molecules

31 March 2020

1 reference

Construction of Normalized RNA‐seq Libraries for Next‐Generation Sequencing Using the Crab Duplex‐Specific Nuclease

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21897427

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRG3068

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Dimensions Publication ID

30 July 2017

1003128522

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