Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

Flexible analysis of high-content CRISPR screening

SPROUT is a machine learning tool to predict the DNA repair outcome in CRISPR experiments.

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

Modelling insertion efficiency for Prime Insertion Experiments

CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

Prime editing guide RNA prediction

Automatically create CRISPR guides for DASH ✂️

CRISPR Guide RNA Designer

A reference-free statistical approach to diversity-generating & mobile genetic element discovery

A program used to find indels on target gene edited by CRISPR/Cas9

Pip package for CRISPR-Cas9 screen analysis

NGS data analysis scripts for HBV elimination research group

convert MAGeCK to python3

Genotyping MUltiplexed-Sequencing of CRISPR-Localized Editing

InDels analysis of CRISPR lines by NGS amplicon sequencing technology for a multicopy gene family.

Python and R pipeline to predict sgRNA efficiency in D.mel via machine learning algorithms trained and optimized on CRIPSR pooled gene essentiality screens