WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
GeneWalk identifies relevant gene functions for a biological context using network representation learning
R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
Flexible analysis of high-content CRISPR screening
✂️ Pooled CRISPR screen optimization tool
Examples to get started with IBM Functional Genomics Platform
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
TnSeq data processing workflow
A system for the integration and analysis of heterogeneous functional genomics data.
Documentation site for the Geneweaver project.
A client library for the integration and analysis of heterogeneous functional genomics data.
The core library for GeneWeaver projects.
The GeneWeaver database interaction code.
Developed by Qiaoshan Lin in Yaowu Yuan Lab
In-house scripts for data processing and analysis
Predicting gene essentiality from transposon insertion sequencing (TnSeq) genomics data with machine learning
Functional LD-interval EnrichmEnt Test -- biological interpretation of GWAS signals
A curated list of regulatory genomics papers and resources.
Ortholog/homolog mapping for Geneweaver
Ralstonia eutropha BarSeq analysis
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