Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors (Q41818598)

12 October 2017

Reconstructing a B-cell clonal lineage. I. Statistical inference of unobserved ancestors (English)

1 reference

12 October 2017

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Thomas B Kepler

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12 October 2017

3 April 2013

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12 October 2017

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12 October 2017

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12 October 2017

103

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PMC publication ID

3901458

Creative Commons Attribution 3.0 Unported

12 October 2017

start time

3 April 2013

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

describes a project that uses

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/3901458

based on heuristic

inferred from PubMed Central ID database lookup

cites work

B-cell-lineage immunogen design in vaccine development with HIV-1 as a case study

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Maturation Pathways of Cross-Reactive HIV-1 Neutralizing Antibodies

6 June 2018

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Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated

6 June 2018

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Differential reactivity of germ line allelic variants of a broadly neutralizing HIV-1 antibody to a gp41 fusion intermediate conformation

6 June 2018

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Envelope deglycosylation enhances antigenicity of HIV-1 gp41 epitopes for both broad neutralizing antibodies and their unmutated ancestor antibodies

6 June 2018

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Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing

6 June 2018

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Analysis of a clonal lineage of HIV-1 envelope V2/V3 conformational epitope-specific broadly neutralizing antibodies and their inferred unmutated common ancestors

6 June 2018

1 reference

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Contributions of humoral and cellular immunity to vaccine-induced protection in humans.

6 June 2018

1 reference

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Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01

6 June 2018

1 reference

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Therapeutic antibodies, vaccines and antibodyomes

6 June 2018

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Robustness of Ancestral Sequence Reconstruction to Phylogenetic Uncertainty

6 June 2018

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SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements

6 June 2018

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Germline-like predecessors of broadly neutralizing antibodies lack measurable binding to HIV-1 envelope glycoproteins: implications for evasion of immune responses and design of vaccine immunogens

6 June 2018

1 reference

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6 June 2018

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IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis

6 June 2018

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Large-scale analysis of human heavy chain V(D)J recombination patterns

6 June 2018

1 reference

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Clustal W and Clustal X version 2.0

6 June 2018

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Discovery of activation-induced cytidine deaminase, the engraver of antibody memory

6 June 2018

1 reference

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iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations

6 June 2018

1 reference

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Bayesian estimation of ancestral character states on phylogenies

6 June 2018

1 reference

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Receptor revision of immunoglobulin heavy chain variable region genes in normal human B lymphocytes

6 June 2018

1 reference

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Anatomy of an antibody molecule: structure, kinetics, thermodynamics and mutational studies of the antilysozyme antibody D1.3.

6 June 2018

1 reference

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Somatic Hypermutation Introduces Insertions and Deletions into Immunoglobulin V Genes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

Interdependence of N nucleotide addition and recombination site choice in V(D)J rearrangement.

6 June 2018

1 reference

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P nucleotides in V(D)J recombination: a fine-structure analysis

6 June 2018

1 reference

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Evolutionary trees from DNA sequences: A maximum likelihood approach

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

Somatic generation of antibody diversity

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

Generation of antibody diversity in the immune response of BALB/c mice to influenza virus hemagglutinin

6 June 2018

1 reference

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In situ studies of the primary immune response to (4-hydroxy-3-nitrophenyl)acetyl. I. The architecture and dynamics of responding cell populations

6 June 2018

1 reference

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Maturation of the immune response in germinal centers

6 June 2018

1 reference

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Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

Enhanced evolvability in immunoglobulin V genes under somatic hypermutation

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3901458

VARIATIONS IN AFFINITIES OF ANTIBODIES DURING THE IMMUNE RESPONSE

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24555054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/24555054

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.12688/F1000RESEARCH.2-103.V1

1 reference

12 October 2017

1 reference

1 reference

PMC publication ID

3901458

12 October 2017

PubMed publication ID

24555054

1 reference

PMC publication ID

3901458