Features of evolutionarily conserved alternative splicing events between Brassica and Arabidopsis (Q46440958)

22 December 2017

title

Features of evolutionarily conserved alternative splicing events between Brassica and Arabidopsis (English)

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22 December 2017

alternative mRNA splicing, via spliceosome

main subject

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Aude Darracq

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22 December 2017

Keith L Adams

series ordinal

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22 December 2017

language of work or name

English

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publication date

2 April 2013

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22 December 2017

published in

New Phytologist

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22 December 2017

volume

199

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22 December 2017

issue

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22 December 2017

page(s)

252-263

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22 December 2017

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

cites work

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UPF1 is required for nonsense-mediated mRNA decay (NMD) and RNAi in Arabidopsis

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How did alternative splicing evolve?

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Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice

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Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

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Alternative splicing and evolution

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Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

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BRAD, the genetics and genomics database for Brassica plants

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Biased gene fractionation and dominant gene expression among the subgenomes of Brassica rapa

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Alternative splicing expands the repertoire of dominant JAZ repressors of jasmonate signaling.

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Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance

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Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants

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Cullins 3a and 3b assemble with members of the broad complex/tramtrack/bric-a-brac (BTB) protein family to form essential ubiquitin-protein ligases (E3s) in Arabidopsis.

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Plant Development: Regulation by Protein Degradation

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Survey of conserved alternative splicing events of mRNAs encoding SR proteins in land plants.

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The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.

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Evolutionary conservation and regulation of particular alternative splicing events in plant SR proteins

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Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

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Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged

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Alternative splicing and evolution: diversification, exon definition and function

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Ets-1 p27: a novel Ets-1 isoform with dominant-negative effects on the transcriptional properties and the subcellular localization of Ets-1 p51.

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Conserved alternative splicing of Arabidopsis transthyretin-like determines protein localization and S-allantoin synthesis in peroxisomes

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Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans

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A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice

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Role of Arabidopsis RAP2.4 in regulating light- and ethylene-mediated developmental processes and drought stress tolerance

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Pre-mRNA splicing in plants: characterization of Ser/Arg splicing factors

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Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

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Multi-domain conformational selection underlies pre-mRNA splicing regulation by U2AF

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Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.

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Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

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Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication

21 January 2018

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Intron retention is a major phenomenon in alternative splicing in Arabidopsis.

21 January 2018

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Expansion of the eukaryotic proteome by alternative splicing

21 January 2018

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The crystal structures of glutathione S-transferases isozymes 1-3 and 1-4 from Anopheles dirus species B

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

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Rubisco regulation: a role for inhibitors

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Crystal structures of two human pyrophosphorylase isoforms in complexes with UDPGlc(Gal)NAc: role of the alternatively spliced insert in the enzyme oligomeric assembly and active site architecture

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Alternative splicing of pre-messenger RNAs in plants in the genomic era.

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Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks

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PROTEIN TARGETING TO THE THYLAKOID MEMBRANE.

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Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.

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Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

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How prevalent is functional alternative splicing in the human genome?

21 January 2018

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Function of alternative splicing

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Regulation of protein function by 'microProteins'.

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The spliceosome: design principles of a dynamic RNP machine

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Characterization of cDNA clones encoding the extrinsic 23 kDa polypeptide of the oxygen-evolving complex of photosystem II in pea.

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Genomewide comparative analysis of alternative splicing in plants

21 January 2018

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Cross-species EST alignments reveal novel and conserved alternative splicing events in legumes

21 January 2018

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Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family

21 January 2018

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The impact of very short alternative splicing on protein structures and functions in the human genome

21 January 2018

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Alternative mRNA splicing generates the two ribulosebisphosphate carboxylase/oxygenase activase polypeptides in spinach and Arabidopsis

21 January 2018

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

21 January 2018

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Three-amino acid extension loop homeodomain proteins Meis2 and TGIF differentially regulate transcription

21 January 2018

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Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

21 January 2018

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Two alternatively spliced isoforms of the Arabidopsis SR45 protein have distinct roles during normal plant development.

21 January 2018

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Sim4cc: a cross-species spliced alignment program

21 January 2018

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Extensive changes to alternative splicing patterns following allopolyploidy in natural and resynthesized polyploids

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/NPH.12238

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22 December 2017

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22 December 2017