Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice (Q38513923)

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scientific article published on 27 April 2008

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English	Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice	scientific article published on 27 April 2008

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

Characterization and comparison of intron structure and alternative splicing between Medicago truncatula, Populus trichocarpa, Arabidopsis and rice (English)

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

alternative mRNA splicing, via spliceosome

1 reference

based on heuristic

inferred from title

Medicago truncatula

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based on heuristic

inferred from title

Populus trichocarpa

object named as

Populus trichocarpa

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based on heuristic

inferred from title

author name string

Jong-Min Baek

1

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

Paul Han

2

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

Alberto Iandolino

3

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

Douglas R Cook

4

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

publication date

27 April 2008

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Europe PubMed Central

PubMed publication ID

3 September 2017

number of pages

12

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based on heuristic

inferred from page(s)

Plant Molecular Biology

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Europe PubMed Central

PubMed publication ID

3 September 2017

67

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Europe PubMed Central

PubMed publication ID

3 September 2017

5

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Europe PubMed Central

PubMed publication ID

3 September 2017

499-510

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

A collection of 10,096 indica rice full-length cDNAs reveals highly expressed sequence divergence between Oryza sativa indica and japonica subspecies

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genomic view of alternative splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

U-richness is a defining feature of plant introns and may function as an intron recognition signal in maize.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing: new insights from global analyses

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolution of alternative splicing after gene duplication

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The ASRG database: identification and survey of Arabidopsis thaliana genes involved in pre-mRNA splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Finishing the euchromatic sequence of the human genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative cross-species alternative splicing in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing of transcripts encoding Toll-like plant resistance proteins - what's the functional relevance to innate immunity?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a cis element for tissue-specific alternative splicing of chloroplast ascorbate peroxidase pre-mRNA in higher plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining a 5' splice site by functional selection in the presence and absence of U1 snRNA 5' end.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Function of alternative splicing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression of RPS4 in tobacco induces an AvrRps4-independent HR that requires EDS1, SGT1 and HSP90.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pre-mRNA splicing in higher plants.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spidey: a tool for mRNA-to-genomic alignments

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct post-transcriptional modifications result into seven alternative transcripts of the CC-NBS-LRR gene JA1tr of Phaseolus vulgaris

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transient induction of a peroxidase gene in Medicago truncatula precedes infection by Rhizobium meliloti

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How did alternative splicing evolve?

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcript accumulation and utilization of alternate and non-consensus splice sites in rice granule-bound starch synthase are temperature-sensitive and controlled by a single-nucleotide polymorphism

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determinants of the inherent strength of human 5' splice sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UPF3 suppresses aberrant spliced mRNA in Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative analysis detects dependencies among the 5' splice-site positions

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Empirical analysis of transcriptional activity in the Arabidopsis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Intron retention is a major phenomenon in alternative splicing in Arabidopsis.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomewide comparative analysis of alternative splicing in plants

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analysis of alternative transcripts of the flax L6 rust resistance gene

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The AU-rich sequences present in the introns of plant nuclear pre-mRNAs are required for splicing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FELINES: a utility for extracting and examining EST-defined introns and exons

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide analysis of alternative pre-mRNA splicing in Arabidopsis thaliana based on full-length cDNA sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Alternative splicing and genome complexity

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Species-specific variation of alternative splicing and transcriptional initiation in six eukaryotes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A subgroup of MYB transcription factor genes undergoes highly conserved alternative splicing in Arabidopsis and rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/18438730

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S11103-008-9334-4

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

3 September 2017

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