The post-genomic era of biological network alignment (Q30490889)

21 August 2017

The post-genomic era of biological network alignment (English)

1 reference

21 August 2017

Tijana Milenković

1 reference

21 August 2017

Fazle E Faisal

1 reference

21 August 2017

Lei Meng

series ordinal

1 reference

21 August 2017

Joseph Crawford

series ordinal

1 reference

21 August 2017

4 June 2015

1 reference

Eurasip Journal on Bioinformatics and Systems Biology

21 August 2017

1 reference

21 August 2017

2015

1 reference

21 August 2017

1 reference

Creative Commons Attribution 4.0 International

21 August 2017

start time

4 June 2015

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

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Dynamic networks reveal key players in aging

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Comparative genomics as a tool to understand evolution and disease

20 June 2018

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NETAL: a new graph-based method for global alignment of protein-protein interaction networks.

20 June 2018

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Computational solutions for omics data

20 June 2018

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SPINAL: scalable protein interaction network alignment

20 June 2018

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Global network alignment using multiscale spectral signatures

20 June 2018

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Graphlet-based edge clustering reveals pathogen-interacting proteins

20 June 2018

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AlignNemo: a local network alignment method to integrate homology and topology

20 June 2018

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PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction.

20 June 2018

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A novel framework for the comparative analysis of biological networks

20 June 2018

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20 June 2018

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20 June 2018

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20 June 2018

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Computational systems biology of aging

20 June 2018

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Improving disease gene prioritization using the semantic similarity of Gene Ontology terms

20 June 2018

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20 June 2018

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Network integration meets network dynamics

20 June 2018

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Topological network alignment uncovers biological function and phylogeny

20 June 2018

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MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis

20 June 2018

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Evolutionarily conserved herpesviral protein interaction networks

20 June 2018

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Applying mass spectrometry-based proteomics to genetics, genomics and network biology

20 June 2018

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Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

20 June 2018

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The ClinSeq Project: piloting large-scale genome sequencing for research in genomic medicine

20 June 2018

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Global alignment of protein-protein interaction networks by graph matching methods

20 June 2018

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IsoRankN: spectral methods for global alignment of multiple protein networks

20 June 2018

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Domain-oriented edge-based alignment of protein interaction networks

20 June 2018

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Uncovering biological network function via graphlet degree signatures.

20 June 2018

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A new graph-based method for pairwise global network alignment

20 June 2018

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The Human Ageing Genomic Resources: online databases and tools for biogerontologists.

20 June 2018

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High-quality binary protein interaction map of the yeast interactome network

20 June 2018

1 reference

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GraphCrunch: a tool for large network analyses

20 June 2018

1 reference

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The BioGRID Interaction Database: 2008 update

20 June 2018

1 reference

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Unequal evolutionary conservation of human protein interactions in interologous networks

20 June 2018

1 reference

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Network-based prediction of protein function

20 June 2018

1 reference

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Graemlin: general and robust alignment of multiple large interaction networks

20 June 2018

1 reference

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Cross-species analysis of biological networks by Bayesian alignment

20 June 2018

1 reference

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QPath: a method for querying pathways in a protein-protein interaction network

20 June 2018

1 reference

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Modeling cellular machinery through biological network comparison

20 June 2018

1 reference

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Topics in herpesvirus genomics and evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Efficient estimation of graphlet frequency distributions in protein-protein interaction networks

20 June 2018

1 reference

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Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks

20 June 2018

1 reference

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Conserved patterns of protein interaction in multiple species

20 June 2018

1 reference

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Online predicted human interaction database

20 June 2018

1 reference

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Integrating reptilian herpesviruses into the family herpesviridae

20 June 2018

1 reference

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Local graph alignment and motif search in biological networks

20 June 2018

1 reference

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GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

PathBLAST: a tool for alignment of protein interaction networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Human protein reference database as a discovery resource for proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

IntAct: an open source molecular interaction database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

20 June 2018

1 reference

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DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Gene ontology: tool for the unification of biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

DIP: the database of interacting proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

KEGG: kyoto encyclopedia of genes and genomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

SGD: Saccharomyces Genome Database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

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The evolutionary conservation of the splicing apparatus between fission yeast and man.

20 June 2018

1 reference

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Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Genome editing: a tool for research and therapy: towards a functional understanding of variants for molecular diagnostics using genome editing.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Global Network Alignment in the Context of Aging

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

A more efficient search strategy for aging genes based on connectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Protein networks, pleiotropy and the evolution of senescence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

The NetAge database: a compendium of networks for longevity, age-related diseases and associated processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Integrative network alignment reveals large regions of global network similarity in yeast and human

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

NetAlign: a web-based tool for comparison of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

MAGNA: Maximizing Accuracy in Global Network Alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

BEAMS: backbone extraction and merge strategy for the global many-to-many alignment of multiple PPI networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

NetCoffee: a fast and accurate global alignment approach to identify functionally conserved proteins in multiple networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Node fingerprinting: an efficient heuristic for aligning biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

MAGNA++: Maximizing Accuracy in Global Network Alignment via both node and edge conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Modeling interactome: scale-free or geometric?

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Graphlet-based measures are suitable for biological network comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Topac: alignment of gene regulatory networks using topology-aware coloring

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

The anatomy of a large-scale hypertextual Web search engine

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Biological network comparison using graphlet degree distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Phylogenetic analysis of metabolic pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS13637-015-0022-9

Complementarity of network and sequence information in homologous proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Global alignment of multiple protein interaction networks.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5270500

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28194172

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/S13637-015-0022-9

1 reference

journals/ejbsb/FaisalMCM15

21 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

21 August 2017

PubMed publication ID

28194172

1 reference