From protein interactions to functional annotation: graph alignment in Herpes. (Q30485164)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

title

From protein interactions to functional annotation: graph alignment in Herpes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Michael Lässig

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

Johannes Berg

series ordinal

1 reference

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25 December 2019

publication date

28 October 2008

1 reference

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25 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

volume

1 reference

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25 December 2019

page(s)

1 reference

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Biomolecular network querying: a promising approach in systems biology

25 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Reconstruction of ancestral protein interaction networks for the bZIP transcription factors.

14 July 2018

1 reference

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Optimization by Simulated Annealing

14 July 2018

1 reference

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Current progress in network research: toward reference networks for key model organisms

14 July 2018

1 reference

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The frailty of adaptive hypotheses for the origins of organismal complexity

14 July 2018

1 reference

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Graemlin: general and robust alignment of multiple large interaction networks

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Cross-species analysis of biological networks by Bayesian alignment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Herpesviral protein networks and their interaction with the human proteome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

TM-align: a protein structure alignment algorithm based on the TM-score

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Conserved patterns of protein interaction in multiple species

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Pairwise local structural alignment of RNA sequences with sequence similarity less than 40%

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Virion proteins of Kaposi's sarcoma-associated herpesvirus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Dissection of the Kaposi's sarcoma-associated herpesvirus gene expression program by using the viral DNA replication inhibitor cidofovir

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

National center for biotechnology information viral genomes project

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Transcription program of human herpesvirus 8 (kaposi's sarcoma-associated herpesvirus).

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Genomewide function conservation and phylogeny in the Herpesviridae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Origin-independent assembly of Kaposi's sarcoma-associated herpesvirus DNA replication compartments in transient cotransfection assays and association with the ORF-K8 protein and cellular PML.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Kaposi's sarcoma-associated herpesvirus latent and lytic gene expression as revealed by DNA arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

VIDA: a virus database system for the organization of animal virus genome open reading frames

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Viral Genome DataBase: storing and analyzing genes and proteins from complete viral genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Characterization of interaction of gH and gL glycoproteins of varicella-zoster virus: their processing and trafficking

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Characterization of the U(L)33 gene product of herpes simplex virus 1.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Nucleotide sequence of the Kaposi sarcoma-associated herpesvirus (HHV8)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Applications and statistics for multiple high-scoring segments in molecular sequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Molecular phylogeny of the alphaherpesvirinae subfamily and a proposed evolutionary timescale

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

The complete DNA sequence of varicella-zoster virus

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Alignment of molecular networks by integer quadratic programming

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

The identification of similarities between biological networks: application to the metabolome and interactome.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Systematic identification of functional orthologs based on protein network comparison

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Alignment of metabolic pathways.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Asymmetric exclusion process and extremal statistics of random sequences.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Varicella-zoster virus (VZV) ORF65 virion protein is dispensable for replication in cell culture and is phosphorylated by casein kinase II, but not by the VZV protein kinases

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2607256

Non-orthologous gene displacement

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18957106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Similarity detection and localization

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18957106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Guilt-by-association goes global

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18957106

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-2-90

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

1 reference

journals/bmcsb/KolarLB08

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json

25 December 2019

PubMed publication ID

18957106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18957106%20AND%20SRC:MED&resulttype=core&format=json