Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. (Q36300014)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

title

Reconstruction of ancestral protein interaction networks for the bZIP transcription factors (English)

1 reference

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29 December 2019

1 reference

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29 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

John W Pinney

1 reference

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29 December 2019

David L Robertson

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

language of work or name

English

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publication date

12 December 2007

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

29 December 2019

published in

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29 December 2019

volume

104

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29 December 2019

issue

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29 December 2019

page(s)

20449-20453

1 reference

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An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network

29 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Evolution at the system level: the natural history of protein interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Functional analysis of gene duplications in Saccharomyces cerevisiae

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Graemlin: general and robust alignment of multiple large interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

A direct comparison of protein interaction confidence assignment schemes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Cross-species analysis of biological networks by Bayesian alignment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Cross-species annotation of basic leucine zipper factor interactions: Insight into the evolution of closed interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Modeling cellular machinery through biological network comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

PathBLAST: a tool for alignment of protein interaction networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Resurrecting ancient genes: experimental analysis of extinct molecules

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

MUSCLE: multiple sequence alignment with high accuracy and high throughput

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Convergent evolution of gene networks by single-gene duplications in higher eukaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Predicting specificity in bZIP coiled-coil protein interactions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Resurrecting the Ancestral Steroid Receptor: Ancient Origin of Estrogen Signaling

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Comprehensive identification of human bZIP interactions with coiled-coil arrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

PAML: a program package for phylogenetic analysis by maximum likelihood

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

Transcription factors 1: bZIP proteins.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

The rapid generation of mutation data matrices from protein sequences

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

A high-throughput assay for Tn5 Tnp-induced DNA cleavage

30 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706339104

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706339104

A hybrid micro-macroevolutionary approach to gene tree reconstruction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706339104

Loss of ancestral genes in the genomic evolution of Ciona intestinalis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706339104

All duplicates are not equal: the difference between small-scale and genome duplication

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0706339104

Estimating and improving protein interaction error rates.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2154451

22 September 2018

Identifiers

DOI

10.1073/PNAS.0706339104

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json

29 December 2019

PubMed publication ID

18077348

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18077348%20AND%20SRC:MED&resulttype=core&format=json