The Framework of Computational Protein Design (Q30395936)

21 June 2017

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title

The Framework of Computational Protein Design (English)

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21 June 2017

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computational biology

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Ilan Samish

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21 June 2017

language of work or name

English

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publication date

1 January 2017

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Methods in Molecular Biology

21 June 2017

published in

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21 June 2017

volume

1529

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21 June 2017

page(s)

3-19

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Theoretical and Computational Protein Design

21 June 2017

cites work

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Electrostatics in computational protein design

21 January 2018

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Protein design with fragment databases

21 January 2018

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21 January 2018

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Computational design of protein therapeutics

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21 January 2018

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Computational design gains momentum in enzyme catalysis engineering

21 January 2018

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Emerging themes in the computational design of novel enzymes and protein-protein interfaces

21 January 2018

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Designing artificial enzymes by intuition and computation

21 January 2018

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Specificity in computational protein design

21 January 2018

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Computational methods for controlling binding specificity

21 January 2018

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Computational design of membrane proteins

21 January 2018

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Computational design of metalloproteins

21 January 2018

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Design of protein conformational switches

21 January 2018

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Computational design of protein-protein interactions

21 January 2018

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Forty years of in vitro evolution

21 January 2018

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Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

21 January 2018

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Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature

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21 January 2018

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Inverse protein folding problem: designing polymer sequences

21 January 2018

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Computational design of novel protein binders and experimental affinity maturation

21 January 2018

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21 January 2018

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The hydrophobic effect and the organization of living matter

21 January 2018

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21 January 2018

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21 January 2018

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Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

21 January 2018

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21 January 2018

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De novo design of a transmembrane Zn²⁺-transporting four-helix bundle

21 January 2018

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A de novo designed protein protein interface

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Exploring the origins of binding specificity through the computational redesign of calmodulin

21 January 2018

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Computational redesign of protein-protein interaction specificity

21 January 2018

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Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments

21 January 2018

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Computational design of antibody-affinity improvement beyond in vivo maturation

21 January 2018

1 reference

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Rational design of a ligand-controlled protein conformational switch

21 January 2018

1 reference

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Design of a switchable eliminase

21 January 2018

1 reference

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Computational design of peptides that target transmembrane helices

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-1-4939-6637-0_1

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

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Rotamer libraries in the 21st century

21 January 2018

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A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-1-4939-6637-0_1

Backbone dependency further improves side chain prediction efficiency in the Energy-based Conformer Library (bEBL).

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2F978-1-4939-6637-0_1

Native protein sequences are close to optimal for their structures

21 January 2018

1 reference

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Probing Designability via a Generalized Model of Helical Bundle Geometry

21 January 2018

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Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions

21 January 2018

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Computational design of a collagen A:B:C-type heterotrimer

21 January 2018

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Modulating calmodulin binding specificity through computational protein design

21 January 2018

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Automated design of specificity in molecular recognition

21 January 2018

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https://api.crossref.org/works/10.1007%2F978-1-4939-6637-0_1

Specificity versus stability in computational protein design

21 January 2018

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Design of protein-interaction specificity gives selective bZIP-binding peptides.

21 January 2018

1 reference

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Computational design and elaboration of a de novo heterotetrameric alpha-helical protein that selectively binds an emissive abiological (porphinato)zinc chromophore

21 January 2018

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Principles for designing ideal protein structures

21 January 2018

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Computational de novo design and characterization of a protein that selectively binds a highly hyperpolarizable abiological chromophore

21 January 2018

1 reference

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Modeling of loops in proteins: a multi-method approach

21 January 2018

1 reference

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SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins

21 January 2018

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Loop modeling: Sampling, filtering, and scoring

21 January 2018

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Computational Design of Intermolecular Stability and Specificity in Protein Self-assembly

21 January 2018

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10.1007/978-1-4939-6637-0_1

21 January 2018

Identifiers

DOI

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21 June 2017

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