Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa (Q24632723)

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English	Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa	scientific article

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scholarly article

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Miniature inverted-repeat transposable elements (MITEs) have been accumulated through amplification bursts and play important roles in gene expression and species diversity in Oryza sativa (English)

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1 reference

based on heuristic

inferred from title

object named as

Oryza sativa

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based on heuristic

inferred from title

author name string

Chen Lu

1

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Jiongjiong Chen

2

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Yu Zhang

3

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Qun Hu

4

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Wenqing Su

5

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Hanhui Kuang

6

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language of work or name

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publication date

March 2012

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Molecular Biology and Evolution

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29

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3

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1005-17

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Differential expression analysis for sequence count data

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7 April 2017

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

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7 April 2017

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7 April 2017

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7 April 2017

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7 April 2017

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

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7 April 2017

SOAP2: an improved ultrafast tool for short read alignment

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7 April 2017

MITE-Hunter: a program for discovering miniature inverted-repeat transposable elements from genomic sequences

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7 April 2017

Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)

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7 April 2017

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7 April 2017

Population growth makes waves in the distribution of pairwise genetic differences

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7 April 2017

A unified classification system for eukaryotic transposable elements

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7 April 2017

Repbase update: a database and an electronic journal of repetitive elements

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7 April 2017

Transposable elements and small RNAs contribute to gene expression divergence between Arabidopsis thaliana and Arabidopsis lyrata

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Small RNAs, DNA methylation and transposable elements in wheat

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

MUST: a system for identification of miniature inverted-repeat transposable elements and applications to Anabaena variabilis and Haloquadratum walsbyi

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Origin and evolution of human microRNAs from transposable elements.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Identification and mapping of expressed genes, simple sequence repeats and transposable elements in centromeric regions of rice chromosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Dramatic amplification of a rice transposable element during recent domestication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Prediction of trans-antisense transcripts in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Rapid recent growth and divergence of rice nuclear genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

MAK, a computational tool kit for automated MITE analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

An active DNA transposon family in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Plant transposable elements: where genetics meets genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Mariner-like transposases are widespread and diverse in flowering plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Micron, a microsatellite-targeting transposable element in the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

The MITE family heartbreaker (Hbr): molecular markers in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Transposon diversity in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Recent, extensive, and preferential insertion of members of the miniature inverted-repeat transposable element family Heartbreaker into genic regions of maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Transposable elements and the evolution of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

The major resistance gene cluster in lettuce is highly duplicated and spans several megabases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

27 September 2017

Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

30 May 2018

Mobilization of a transposon in the rice genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

30 May 2018

Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

30 May 2018

Identification and characterization of 14 transposon-like elements in the noncoding regions of members of the Xa21 family of disease resistance genes in rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

30 May 2018

Sequence and analysis of rice chromosome 4.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Evidence that a family of miniature inverted-repeat transposable elements (MITEs) from the Arabidopsis thaliana genome has arisen from a pogo-like DNA transposon

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

The plant MITE mPing is mobilized in anther culture

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Criteria for annotation of plant MicroRNAs

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

A genome-wide view of miniature inverted-repeat transposable elements (MITEs) in rice, Oryza sativa ssp. japonica

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Composition and structure of the centromeric region of rice chromosome 8.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Kiddo, a new transposable element family closely associated with rice genes

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Tuned for transposition: molecular determinants underlying the hyperactivity of a Stowaway MITE.

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Statistical tests for detecting gene conversion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3278479

28 November 2018

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSR282

21 January 2018

Genome-wide distribution and potential regulatory functions of AtATE, a novel family of miniature inverted-repeat transposable elements in Arabidopsis thaliana

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contrasting evolutionary patterns and target specificities among three Tourist-like MITE families in the maize genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MDM-1 and MDM-2: two mutator-derived MITE families in rice

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.).

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/22096216

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/MOLBEV/MSR282

1 reference

Consolidated OpenCitations Corpus – April 2017

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PMC publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

PubMed publication ID

1 reference

Consolidated OpenCitations Corpus – April 2017

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ResearchGate publication ID

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