Variation in the mutation rate across mammalian genomes (Q37942062)

25 August 2017

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title

Variation in the mutation rate across mammalian genomes (English)

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25 August 2017

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25 August 2017

Alan Hodgkinson

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4 October 2011

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25 August 2017

published in

Nature Reviews Genetics

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25 August 2017

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25 August 2017

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25 August 2017

page(s)

756-766

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ON THE TOPOGRAPHY OF THE GENETIC FINE STRUCTURE

25 August 2017

cites work

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Statistical analysis of pathogenicity of somatic mutations in cancer

21 January 2018

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Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila

21 January 2018

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Variation in genome-wide mutation rates within and between human families

21 January 2018

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Evidence that mutation is universally biased towards AT in bacteria

21 January 2018

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Neighboring-nucleotide effects on single nucleotide polymorphisms: a study of 2.6 million polymorphisms across the human genome

21 January 2018

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Bayesian Markov chain Monte Carlo sequence analysis reveals varying neutral substitution patterns in mammalian evolution

21 January 2018

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Inference of Mutation Parameters and Selective Constraint in Mammalian Coding Sequences by Approximate Bayesian Computation

21 January 2018

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Phylogenetic estimation of context-dependent substitution rates by maximum likelihood

21 January 2018

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Initial sequencing and analysis of the human genome

21 January 2018

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CpG mutation rates in the human genome are highly dependent on local GC content

21 January 2018

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Molecular basis of base substitution hotspots in Escherichia coli

21 January 2018

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Context dependent substitution biases vary within the human genome

21 January 2018

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Substitution rate variation among sites in mitochondrial hypervariable region I of humans and chimpanzees

21 January 2018

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Substitution rate variation among sites in hypervariable region 1 of human mitochondrial DNA.

21 January 2018

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Hypervariable sites in the mtDNA control region are mutational hotspots

21 January 2018

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Does human mtDNA recombine?

21 January 2018

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Theoretical analysis of mutation hotspots and their DNA sequence context specificity

21 January 2018

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Cryptic variation in the human mutation rate

21 January 2018

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Single nucleotide differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies

21 January 2018

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The genomic distribution and local context of coincident SNPs in human and chimpanzee.

21 January 2018

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CpG-rich islands and the function of DNA methylation

21 January 2018

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Transcription induces strand-specific mutations at the 5' end of human genes

21 January 2018

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Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection

21 January 2018

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Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation

21 January 2018

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Cytosine deamination plays a primary role in the evolution of mammalian isochores

21 January 2018

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Isochores and the evolutionary genomics of vertebrates

21 January 2018

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Evolutionary consequences of nonrandom damage and repair of chromatin domains

21 January 2018

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Transcription-coupled DNA repair: two decades of progress and surprises

21 January 2018

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Transcription-associated mutational asymmetry in mammalian evolution

21 January 2018

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Gene expression, synteny, and local similarity in human noncoding mutation rates.

21 January 2018

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Evidence that localized variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair.

21 January 2018

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High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

21 January 2018

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Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

21 January 2018

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Indel-associated mutation rate varies with mating system in flowering plants

21 January 2018

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Clusters of nucleotide substitutions and insertion/deletion mutations are associated with repeat sequences

21 January 2018

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Mutation biases and mutation rate variation around very short human microsatellites revealed by human-chimpanzee-orangutan genomic sequence alignments

21 January 2018

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Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae

21 January 2018

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Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes.

21 January 2018

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Evidence that replication-associated mutation alone does not explain between-chromosome differences in substitution rates

21 January 2018

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A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans

21 January 2018

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Why do human diversity levels vary at a megabase scale?

21 January 2018

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Human SNP variability and mutation rate are higher in regions of high recombination

21 January 2018

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Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

21 January 2018

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A genome-wide view of mutation rate co-variation using multivariate analyses

21 January 2018

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The modern molecular clock

21 January 2018

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CpG dinucleotides and the mutation rate of non-CpG DNA

21 January 2018

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Human triallelic sites: evidence for a new mutational mechanism?

21 January 2018

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Evidence for a High Frequency of Simultaneous Double-Nucleotide Substitutions

21 January 2018

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Pervasive Multinucleotide Mutational Events in Eukaryotes

21 January 2018

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Mutation rates differ among regions of the mammalian genome

21 January 2018

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Chromosomal location effects on gene sequence evolution in mammals

21 January 2018

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21 January 2018

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Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

21 January 2018

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Conserved non-genic sequences - an unexpected feature of mammalian genomes

21 January 2018

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Widely distributed noncoding purifying selection in the human genome

21 January 2018

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Massive turnover of functional sequence in human and other mammalian genomes

21 January 2018

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The scale of mutational variation in the murid genome

21 January 2018

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The influence of recombination on human genetic diversity

21 January 2018

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Initial sequence of the chimpanzee genome and comparison with the human genome

21 January 2018

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Weak preservation of local neutral substitution rates across mammalian genomes

21 January 2018

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Human-macaque comparisons illuminate variation in neutral substitution rates

21 January 2018

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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

21 January 2018

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Human mutation rate associated with DNA replication timing

21 January 2018

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The impact of recombination on nucleotide substitutions in the human genome

21 January 2018

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Chromatin structure and evolution in the human genome.

21 January 2018

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Genomewide comparison of DNA sequences between humans and chimpanzees

21 January 2018

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Strong male-driven evolution of DNA sequences in humans and apes

21 January 2018

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Population genetic implications from sequence variation in four Y chromosome genes

21 January 2018

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Genic mutation rates in mammals: local similarity, chromosomal heterogeneity, and X-versus-autosome disparity

21 January 2018

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Male-biased mutation rate and divergence in autosomal, z-linked and w-linked introns of chicken and Turkey

21 January 2018

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Characteristics, causes and evolutionary consequences of male-biased mutation

21 January 2018

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Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison

21 January 2018

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The common biology of cancer and ageing

21 January 2018

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Exploring the Genomes of Cancer Cells: Progress and Promise

21 January 2018

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Initial genome sequencing and analysis of multiple myeloma

21 January 2018

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The mutation spectrum revealed by paired genome sequences from a lung cancer patient

21 January 2018

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A comprehensive catalogue of somatic mutations from a human cancer genome

21 January 2018

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A small-cell lung cancer genome with complex signatures of tobacco exposure

21 January 2018

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Core signaling pathways in human pancreatic cancers revealed by global genomic analyses

21 January 2018

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An integrated genomic analysis of human glioblastoma multiforme

21 January 2018

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The genomic landscapes of human breast and colorectal cancers

21 January 2018

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Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome

21 January 2018

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Uncovering the mutation-fixation correlation in short lineages

21 January 2018

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The Positive Correlation between dN/dS and dS in Mammals Is Due to Runs of Adjacent Substitutions

21 January 2018

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High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome.

21 January 2018

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Adaptive evolution of non-coding DNA in Drosophila

21 January 2018

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Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content

21 January 2018

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Synonymous but not the same: the causes and consequences of codon bias

21 January 2018

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Widespread genomic signatures of natural selection in hominid evolution

21 January 2018

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Paleontological evidence to date the tree of life

21 January 2018

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High genomic deleterious mutation rates in hominids

21 January 2018

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Global patterns of human DNA sequence variation in a 10-kb region on chromosome 1.

21 January 2018

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Insertion and deletion processes in recent human history

21 January 2018

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Evolution of the mutation rate

21 January 2018

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Characterization of single-nucleotide polymorphisms in coding regions of human genes

21 January 2018

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The proteins of linked genes evolve at similar rates

21 January 2018

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Patterns of nucleotide substitution in pseudogenes and functional genes

21 January 2018

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Timing of Replication Is a Determinant of Neutral Substitution Rates but Does Not Explain Slow Y Chromosome Evolution in Rodents

21 January 2018

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The influence of nearest neighbors on the rate and pattern of spontaneous point mutations

21 January 2018

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Mutation rate distribution inferred from coincident SNPs and coincident substitutions

31 March 2020

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Genomewide association between insertions/deletions and the nucleotide diversity in bacteria

31 March 2020

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The large-scale distribution of somatic mutations in cancer genomes.

31 March 2020

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The mutation rate of the gene for haemophilia, and its segregation ratios in males and females

31 March 2020

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A highly unexpected strong correlation between fixation probability of nonsynonymous mutations and mutation rate

31 March 2020

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Patterns and rates of indel evolution in processed pseudogenes from humans and murids

31 March 2020

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Low nucleotide diversity in man

31 March 2020

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12 December 2020

Estimate of the mutation rate per nucleotide in humans

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12 December 2020

The evolution of mutation rates

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12 December 2020

The evolution of isochores: evidence from SNP frequency distributions

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12 December 2020

Neighboring base effects on substitution rates in pseudogenes

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12 December 2020

Evidence of selection on silent site base composition in mammals: potential implications for the evolution of isochores and junk DNA.

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12 December 2020

On the Organization of Higher Chromosomes

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12 December 2020

Identifiers

DOI

10.1038/NRG3098

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25 August 2017

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