The impact of recombination on nucleotide substitutions in the human genome (Q33332585)

25 July 2017

title

The impact of recombination on nucleotide substitutions in the human genome (English)

1 reference

25 July 2017

Laurent Duret

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Peter F Arndt

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25 July 2017

publication date

9 May 2008

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25 July 2017

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25 July 2017

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25 July 2017

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25 July 2017

page(s)

e1000071

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Creative Commons Attribution 4.0 International

25 July 2017

start time

9 May 2008

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Warm-blooded isochore structure in Nile crocodile and turtle

21 June 2018

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Isochores result from mutation not selection

21 June 2018

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21 June 2018

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Efficient repair of all types of single-base mismatches in recombination intermediates in Chinese hamster ovary cells. Competition between long-patch and G-T glycosylase-mediated repair of G-T mismatches

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis.

21 June 2018

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Chromosome-size dependent control of meiotic recombination in humans.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Inconsistency of evolutionary tree topology reconstruction methods when substitution rates vary across characters

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

The vertebrate genome: isochores and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Reduced natural selection associated with low recombination in Drosophila melanogaster.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

DNA synthesis errors associated with double-strand-break repair

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Evolution of a finite population under gene conversion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

DNA methylation and the frequency of CpG in animal DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

An analysis of the bovine genome by Cs2SO4-Ag density gradient centrifugation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

The effects of mispair and nonpair correction in hybrid DNA on base ratios (G + C content) and total amounts of DNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Mutation rates differ among regions of the mammalian genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Repair of base-base mismatches in simian and human cells.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Evolutionary biology. New genes sweep clean

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

Molecular basis of base substitution hotspots in Escherichia coli

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2346554

A unification of mosaic structures in the human genome

21 June 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Cytosine deamination plays a primary role in the evolution of mammalian isochores

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Recombination drives the evolution of GC-content in the human genome.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Male-driven biased gene conversion governs the evolution of base composition in human alu repeats.

21 January 2018

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Fine-scale recombination patterns differ between chimpanzees and humans

21 January 2018

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Comparison of fine-scale recombination rates in humans and chimpanzees.

21 January 2018

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Problems with Parsimony in Sequences of Biased Base Composition

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Distinct changes of genomic biases in nucleotide substitution at the time of Mammalian radiation.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Efficient likelihood computations with nonreversible models of evolution.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

DNA sequence evolution with neighbor-dependent mutation.

21 January 2018

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Factors influencing recombination frequency and distribution in a human meiotic crossover hotspot.

21 January 2018

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Identification and measurement of neighbor-dependent nucleotide substitution processes.

21 January 2018

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cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Human polymorphism around recombination hotspots: Figure 1

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Strong regional biases in nucleotide substitution in the chicken genome.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

High mutation rates in human and ape pseudoautosomal genes

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

A gradient of silent substitution rate in the human pseudoautosomal region.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Hill-Robertson interference is a minor determinant of variations in codon bias across Drosophila melanogaster and Caenorhabditis elegans genomes.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000071

Allelic recombination and de novo deletions in sperm in the human beta-globin gene region

21 January 2018

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Context-dependent mutation rates may cause spurious signatures of a fixation bias favoring higher GC-content in humans.

21 January 2018

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A Novel Method Distinguishes Between Mutation Rates and Fixation Biases in Patterns of Single-Nucleotide Substitution

31 October 2018

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Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

21 January 2018

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12 December 2020

Recombination and mammalian genome evolution

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12 December 2020

GC content evolution of the human and mouse genomes: insights from the study of processed pseudogenes in regions of different recombination rates

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12 December 2020

The GC content of primates and rodents genomes is not at equilibrium: a reply to Antezana

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12 December 2020

10.1371/JOURNAL.PGEN.1000071

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DOI

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25 July 2017

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25 July 2017

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