Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken (Q31008999)

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English	Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

16 October 2017

Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken (English)

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Europe PubMed Central

PMC publication ID

16 October 2017

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based on heuristic

inferred from title

whole genome sequencing

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based on heuristic

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Hubert Pausch

3

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author name string

Guiyan Ni

1

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Europe PubMed Central

PMC publication ID

16 October 2017

Tim M Strom

2

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Europe PubMed Central

PMC publication ID

16 October 2017

Christian Reimer

4

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Europe PubMed Central

PMC publication ID

16 October 2017

Rudolf Preisinger

5

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

Henner Simianer

6

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Europe PubMed Central

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16 October 2017

Malena Erbe

7

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Europe PubMed Central

PMC publication ID

16 October 2017

language of work or name

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publication date

21 October 2015

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Europe PubMed Central

PMC publication ID

16 October 2017

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Europe PubMed Central

PMC publication ID

16 October 2017

16

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

824

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

Performance of genotype imputation for low frequency and rare variants from the 1000 genomes

1 reference

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21 June 2018

Evaluation of variant identification methods for whole genome sequencing data in dairy cattle.

1 reference

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21 June 2018

Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy

1 reference

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21 June 2018

Systematic assessment of imputation performance using the 1000 Genomes reference panels

1 reference

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21 June 2018

Evaluation of measures of correctness of genotype imputation in the context of genomic prediction: a review of livestock applications

1 reference

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21 June 2018

Variant detection sensitivity and biases in whole genome and exome sequencing

1 reference

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21 June 2018

Accuracy of imputation to whole-genome sequence data in Holstein Friesian cattle

1 reference

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21 June 2018

A new approach for efficient genotype imputation using information from relatives

1 reference

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21 June 2018

Analytical validation of whole exome and whole genome sequencing for clinical applications

1 reference

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21 June 2018

Sequencing depth and coverage: key considerations in genomic analyses

1 reference

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21 June 2018

Variant callers for next-generation sequencing data: a comparison study

1 reference

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21 June 2018

Comparing a few SNP calling algorithms using low-coverage sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Assessment of the genomic variation in a cattle population by re-sequencing of key animals at low to medium coverage

1 reference

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21 June 2018

Sequencing studies in human genetics: design and interpretation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Imputation of high-density genotypes in the Fleckvieh cattle population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Development of a high density 600K SNP genotyping array for chicken

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Assessment of genotype imputation performance using 1000 Genomes in African American studies

1 reference

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21 June 2018

A high resolution genome-wide scan for significant selective sweeps: an application to pooled sequence data in laying chickens

1 reference

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21 June 2018

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

1 reference

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21 June 2018

Limitations of the human reference genome for personalized genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Genotype imputation with thousands of genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Customisation of the exome data analysis pipeline using a combinatorial approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Performance comparison of whole-genome sequencing platforms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Comparison of solution-based exome capture methods for next generation sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

In-depth annotation of SNPs arising from resequencing projects using NGS-SNP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Linkage disequilibrium reveals different demographic history in egg laying chickens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

1 reference

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21 June 2018

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Whole-genome resequencing reveals loci under selection during chicken domestication

1 reference

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Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

1 reference

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A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

1 reference

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21 June 2018

The Sequence Alignment/Map format and SAMtools

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

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Applications of next-generation sequencing technologies in functional genomics

1 reference

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21 June 2018

The impact of next-generation sequencing technology on genetics

1 reference

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Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

1 reference

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21 June 2018

Whole-genome re-sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

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Functional variation and evolution of non-coding DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

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Finishing the euchromatic sequence of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

21 June 2018

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4618161

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Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

21 January 2018

Assessing single nucleotide variant detection and genotype calling on whole-genome sequenced individuals.

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

21 January 2018

Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle.

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

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Comparison of different methods for imputing genome-wide marker genotypes in Swedish and Finnish Red Cattle

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

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Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'.

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

21 January 2018

Conserved noncoding sequences are selectively constrained and not mutation cold spots

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

21 January 2018

Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs

1 reference

https://api.crossref.org/works/10.1186%2FS12864-015-2059-2

21 January 2018

Identifiers

10.1186/S12864-015-2059-2

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Europe PubMed Central

PMC publication ID

16 October 2017

Dimensions Publication ID

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-015-2059-2

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 October 2017

PubMed publication ID

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Europe PubMed Central

PMC publication ID

16 October 2017

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