Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements (Q37388875)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24298051%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

Chromothripsis and beyond: rapid genome evolution from complex chromosomal rearrangements (English)

1 reference

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2 March 2020

1 reference

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2 March 2020

Cheng-Zhong Zhang

1 reference

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2 March 2020

David Pellman

series ordinal

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2 March 2020

publication date

1 December 2013

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2 March 2020

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2 March 2020

volume

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2 March 2020

issue

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2 March 2020

page(s)

2513-2530

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Pan-cancer patterns of somatic copy number alteration

2 March 2020

cites work

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6 September 2017

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Chromothripsis under the microscope: a cytogenetic perspective of two cases of AML with catastrophic chromosome rearrangement

6 September 2017

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Single-cell sequencing-based technologies will revolutionize whole-organism science

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The strength of combined cytogenetic and mate-pair sequencing techniques illustrated by a germline chromothripsis rearrangement involving FOXP2.

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Melanoma-associated mutations in protein phosphatase 6 cause chromosome instability and DNA damage owing to dysregulated Aurora-A.

6 September 2017

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6 September 2017

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6 September 2017

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Chromothripsis in Hodgkin lymphoma

6 September 2017

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Punctuated evolution of prostate cancer genomes

6 September 2017

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Gene fusions by chromothripsis of chromosome 5q in the VCaP prostate cancer cell line

6 September 2017

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6 September 2017

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6 September 2017

Cancer genome landscapes

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TERT promoter mutations occur frequently in gliomas and a subset of tumors derived from cells with low rates of self-renewal

6 September 2017

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Criteria for inference of chromothripsis in cancer genomes

6 September 2017

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Chromothripsis in congenital disorders and cancer: similarities and differences

6 September 2017

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Breakpoint profiling of 64 cancer genomes reveals numerous complex rearrangements spawned by homology-independent mechanisms

6 September 2017

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Mechanisms of programmed DNA lesions and genomic instability in the immune system.

6 September 2017

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Highly recurrent TERT promoter mutations in human melanoma

6 September 2017

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TERT promoter mutations in familial and sporadic melanoma

6 September 2017

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Half or more of the somatic mutations in cancers of self-renewing tissues originate prior to tumor initiation

6 September 2017

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DNA replication timing, genome stability and cancer: late and/or delayed DNA replication timing is associated with increased genomic instability.

6 September 2017

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Chromothripsis and focal copy number alterations determine poor outcome in malignant melanoma

6 September 2017

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Replication stress and genome rearrangements: lessons from yeast models

6 September 2017

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Linking abnormal mitosis to the acquisition of DNA damage

6 September 2017

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Recombination-restarted replication makes inverted chromosome fusions at inverted repeats.

6 September 2017

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Differential relationship of DNA replication timing to different forms of human mutation and variation

6 September 2017

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Chromothripsis: chromosomes in crisis

6 September 2017

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Mutations arising during repair of chromosome breaks

6 September 2017

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6 September 2017

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Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes

6 September 2017

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Chromatin condensation dynamics and implications of induced premature chromosome condensation

6 September 2017

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Evolution of the cancer genome

6 September 2017

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De novo CNV formation in mouse embryonic stem cells occurs in the absence of Xrcc4-dependent nonhomologous end joining

6 September 2017

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Chromothripsis and cancer: causes and consequences of chromosome shattering

6 September 2017

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Poly-gene fusion transcripts and chromothripsis in prostate cancer

6 September 2017

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Subgroup-specific structural variation across 1,000 medulloblastoma genomes

6 September 2017

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Human aneuploidy: mechanisms and new insights into an age-old problem

6 September 2017

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Melanoma genome sequencing reveals frequent PREX2 mutations

6 September 2017

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Mutational processes molding the genomes of 21 breast cancers

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and transgenic integration

6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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6 September 2017

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Genome sequencing of pediatric medulloblastoma links catastrophic DNA rearrangements with TP53 mutations

6 September 2017

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Chromothripsis and human disease: piecing together the shattering process.

6 September 2017

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6 September 2017

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6 September 2017

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DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes

6 September 2017

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Characterizing complex structural variation in germline and somatic genomes

6 September 2017

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Common fragile sites: mechanisms of instability revisited.

6 September 2017

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Chromothripsis is a common mechanism driving genomic rearrangements in primary and metastatic colorectal cancer

6 September 2017

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Variation in the mutation rate across mammalian genomes

6 September 2017

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Inverted genomic segments and complex triplication rearrangements are mediated by inverted repeats in the human genome

6 September 2017

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Chromosome catastrophes involve replication mechanisms generating complex genomic rearrangements

6 September 2017

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Haplotype phasing: existing methods and new developments

6 September 2017

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Chromothripsis identifies a rare and aggressive entity among newly diagnosed multiple myeloma patients

6 September 2017

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Hallmarks of Cancer: The Next Generation

6 September 2017

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The Human Cleavage Stage Embryo Is a Cradle of Chromosomal Rearrangements

6 September 2017

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The genomic complexity of primary human prostate cancer

6 September 2017

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Massive genomic rearrangement acquired in a single catastrophic event during cancer development

6 September 2017

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The patterns and dynamics of genomic instability in metastatic pancreatic cancer

6 September 2017

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Accumulation of driver and passenger mutations during tumor progression

6 September 2017

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Increased mutagenesis and unique mutation signature associated with mitotic gene conversion

6 September 2017

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Higher-order genome organization in human disease

6 September 2017

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TP53 mutations in human cancers: origins, consequences, and clinical use

6 September 2017

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Genomic instability--an evolving hallmark of cancer

6 September 2017

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The landscape of somatic copy-number alteration across human cancers

6 September 2017

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Proliferation of aneuploid human cells is limited by a p53-dependent mechanism.

6 September 2017

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Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

6 September 2017

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Complex landscapes of somatic rearrangement in human breast cancer genomes

6 September 2017

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The DNA-damage response in human biology and disease

6 September 2017

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Computational methods for discovering structural variation with next-generation sequencing

6 September 2017

1 reference

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

6 September 2017

1 reference

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Mechanisms of change in gene copy number

6 September 2017

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Complex human chromosomal and genomic rearrangements

6 September 2017

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Boveri revisited: chromosomal instability, aneuploidy and tumorigenesis

6 September 2017

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The DNA replication FoSTeS/MMBIR mechanism can generate genomic, genic and exonic complex rearrangements in humans

6 September 2017

1 reference

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Commonality but diversity in cancer gene fusions

6 September 2017

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6 September 2017

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Complex rearrangements in patients with duplications of MECP2 can occur by fork stalling and template switching

6 September 2017

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The emerging role of nuclear architecture in DNA repair and genome maintenance

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Replication stress induces genome-wide copy number changes in human cells that resemble polymorphic and pathogenic variants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

An oncogene-induced DNA damage model for cancer development

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Transcription-coupled nucleotide excision repair in mammalian cells: molecular mechanisms and biological effects

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

A DNA replication mechanism for generating nonrecurrent rearrangements associated with genomic disorders

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Paired-end mapping reveals extensive structural variation in the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The impact of translocations and gene fusions on cancer causation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Patterns of somatic mutation in human cancer genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The Stability of Broken Ends of Chromosomes in Zea Mays.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Novel patterns of genome rearrangement and their association with survival in breast cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Spatial genome organization in the formation of chromosomal translocations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Gene amplification: yeast takes a turn

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

On the mechanism of gene amplification induced under stress in Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Premature condensation induces breaks at the interface of early and late replicating chromosome bands bearing common fragile sites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Cytokinesis failure generating tetraploids promotes tumorigenesis in p53-null cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Fine-scale structural variation of the human genome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Activation of the DNA damage checkpoint and genomic instability in human precancerous lesions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Cell-cycle checkpoints and cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The p53 response to DNA damage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Delayed replication timing leads to delayed mitotic chromosome condensation and chromosomal instability of chromosome translocations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Chromosomal breakage-fusion-bridge events cause genetic intratumor heterogeneity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Abrogation of oncogene-associated apoptosis allows transformation of p53-deficient cells

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Chromosome pulverization in human binucleate cells following colcemid treatment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Recent progress in understanding mechanisms of mammalian DNA amplification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The clonal evolution of tumor cell populations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Gene amplification as double minutes or homogeneously staining regions in solid tumors: origin and structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Signatures of mutation and selection in the cancer genome

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Estimation of rearrangement phylogeny for cancer genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Nuclear receptor-induced chromosomal proximity and DNA breaks underlie specific translocations in cancer

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

DNA lesions sequestered in micronuclei induce a local defective-damage response.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

High order chromatin architecture shapes the landscape of chromosomal alterations in cancer

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Oncogene-dependent apoptosis in extracts from drug-resistant cells

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Double minute chromosomes in glioblastoma multiforme are revealed by precise reconstruction of oncogenic amplicons

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Diverse mechanisms of somatic structural variations in human cancer genomes

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Sporadic and reversible chromothripsis in chronic lymphocytic leukemia revealed by longitudinal genomic analysis.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Human mutation rate associated with DNA replication timing

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Characterization of uterine leiomyomas by whole-genome sequencing.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Constitutional chromothripsis rearrangements involve clustered double-stranded DNA breaks and nonhomologous repair mechanisms

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The large-scale distribution of somatic mutations in cancer genomes.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Extrachromosomal amplification mechanisms in a glioma with amplified sequences from multiple chromosome loci

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Chromosome instability is common in human cleavage-stage embryos.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Resolution of anaphase bridges in cancer cells

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Reconstructing tumor genome architectures

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

Unrepaired DNA breaks in p53-deficient cells lead to oncogenic gene amplification subsequent to translocations.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

When catastrophe strikes a cell

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3861665

The human leulocyte test system. VII. Further investigations concerning micronucleus-derived premature chromosome condensation

3 December 2018

1 reference

12 December 2020

Mammalian Cell Fusion : Induction of Premature Chromosome Condensation in Interphase Nuclei

1 reference

12 December 2020

Chromothripsis as a mechanism driving complex de novo structural rearrangements in the germline†

1 reference

12 December 2020

Spatial proximity of translocation-prone gene loci in human lymphomas

1 reference

12 December 2020

Cancer genomes evolve by pulverizing single chromosomes

1 reference

12 December 2020

The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks

1 reference

12 December 2020

Identifiers

DOI

10.1101/GAD.229559.113

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24298051%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24298051%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

24298051

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24298051%20AND%20SRC:MED&resulttype=core&format=json