Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants (Q34614125)

3 August 2017

title

Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants (English)

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3 August 2017

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Majid Kazemian

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3 August 2017

Susan E Celniker

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3 August 2017

Saurabh Sinha

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3 August 2017

author name string

Metewo Selase Enuameh

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3 August 2017

Yuna Asriyan

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3 August 2017

Adam Richards

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3 August 2017

Ryan G Christensen

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3 August 2017

Victoria L Hall

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3 August 2017

Cong Zhu

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3 August 2017

Hannah Pham

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3 August 2017

Qiong Cheng

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3 August 2017

Charles Blatti

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3 August 2017

Jessie A Brasefield

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3 August 2017

Matthew D Basciotta

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3 August 2017

Jianhong Ou

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3 August 2017

Joseph C McNulty

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3 August 2017

Lihua J Zhu

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3 August 2017

Gary D Stormo

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3 August 2017

Michael H Brodsky

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3 August 2017

Scot A Wolfe

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3 August 2017

publication date

7 March 2013

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3 August 2017

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3 August 2017

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3 August 2017

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3 August 2017

page(s)

928-940

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describes a project that uses

3 August 2017

ImageJ

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3668361/fullTextXML

inferred from PubMed Central ID database lookup

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Human zinc fingers as building blocks in the construction of artificial transcription factors.

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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Comprehensive DNA recognition through concerted interactions from adjacent zinc fingers

7 July 2018

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Synergy between adjacent zinc fingers in sequence-specific DNA recognition

7 July 2018

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Design of polydactyl zinc-finger proteins for unique addressing within complex genomes

7 July 2018

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Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

7 July 2018

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Mutations affecting growth cone guidance in Drosophila: genes necessary for guidance toward or away from the midline

7 July 2018

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Use of a zinc-finger consensus sequence framework and specificity rules to design specific DNA binding proteins

7 July 2018

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Crystal structure of a five-finger GLI-DNA complex: new perspectives on zinc fingers

7 July 2018

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Zinc finger phage: affinity selection of fingers with new DNA-binding specificities

7 July 2018

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The crystal structure of a two zinc-finger peptide reveals an extension to the rules for zinc-finger/DNA recognition

7 July 2018

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lola encodes a putative transcription factor required for axon growth and guidance in Drosophila

7 July 2018

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7 July 2018

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7 July 2018

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7 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

A large protein containing zinc finger domains binds to related sequence elements in the enhancers of the class I major histocompatibility complex and kappa immunoglobulin genes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

A DNA-binding protein containing two widely separated zinc finger motifs that recognize the same DNA sequence

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

The dorsal gradient morphogen regulates stripes of rhomboid expression in the presumptive neuroectoderm of the Drosophila embryo

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Sequence discrimination by alternatively spliced isoforms of a DNA binding zinc finger domain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Drosophila BTB/POZ domains of "ttk group" can form multimers and selectively interact with each other

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Predicting expression patterns from regulatory sequence in Drosophila segmentation.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Design, construction and in vitro testing of zinc finger nucleases.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Alternative splicing of lola generates 19 transcription factors controlling axon guidance in Drosophila.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Tramtrack co-operates to prevent inappropriate neural development in Drosophila.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Rational design of artificial zinc-finger proteins using a nondegenerate recognition code table.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Lola regulates midline crossing of CNS axons in Drosophila

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Validated zinc finger protein designs for all 16 GNN DNA triplet targets

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

LOLA has the properties of a master regulator of axon-target interaction for SNb motor axons of Drosophila.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

A Drosophila protein related to the human zinc finger transcription factor PRDII/MBPI/HIV-EP1 is required for dpp signaling.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

DNA-induced α-helix capping in conserved linker sequences is a determinant of binding affinity in Cys2-His2 zinc fingers

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3668361

A direct comparison of the properties of natural and designed zinc-finger proteins

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23471540

12 December 2020

inferred from PubMed ID database lookup

Preassembled zinc-finger arrays for rapid construction of ZFNs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23471540

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1101/GR.151472.112

1 reference

release_ljteiu3fpjcd7ah2epzlllwuca

3 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ljteiu3fpjcd7ah2epzlllwuca

24 November 2022

mapped directly with Wikidata item

PMC publication ID

3668361

1 reference

3 August 2017

1 reference