Coalescent-based association mapping and fine mapping of complex trait loci (Q34570951)

3 August 2017

title

Coalescent-based association mapping and fine mapping of complex trait loci (English)

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3 August 2017

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Jonathan K. Pritchard

series ordinal

object named as

Jonathan K Pritchard

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3 August 2017

Sebastian Zöllner

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3 August 2017

language of work or name

English

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publication date

16 October 2004

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3 August 2017

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inferred from page(s)

published in

Genetics

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3 August 2017

volume

169

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3 August 2017

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3 August 2017

page(s)

1071-1092

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Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide-polymorphism genotype data.

3 August 2017

cites work

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7 July 2018

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Fine-scale mapping of disease genes with multiple mutations via spatial clustering techniques

7 July 2018

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An intronic SNP in a RUNX1 binding site of SLC22A4, encoding an organic cation transporter, is associated with rheumatoid arthritis

7 July 2018

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Multipoint linkage-disequilibrium mapping narrows location interval and identifies mutation heterogeneity

7 July 2018

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A comparison of bayesian methods for haplotype reconstruction from population genotype data

7 July 2018

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Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms

7 July 2018

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False discovery rate in linkage and association genome screens for complex disorders.

7 July 2018

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Additional SNPs and linkage-disequilibrium analyses are necessary for whole-genome association studies in humans

7 July 2018

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On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit.

7 July 2018

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Meta-analysis of genetic association studies supports a contribution of common variants to susceptibility to common disease

7 July 2018

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Association of the ADAM33 gene with asthma and bronchial hyperresponsiveness

7 July 2018

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The structure of haplotype blocks in the human genome

7 July 2018

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Quantitative-trait homozygosity and association mapping and empirical genomewide significance in large, complex pedigrees: fasting serum-insulin level in the Hutterites

7 July 2018

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Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies.

7 July 2018

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Linkage disequilibrium: what history has to tell us.

7 July 2018

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Estimating recombination rates from population genetic data

7 July 2018

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Bayesian analysis of haplotypes for linkage disequilibrium mapping

7 July 2018

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Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex

7 July 2018

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On the allelic spectrum of human disease

7 July 2018

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High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence

7 July 2018

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7 July 2018

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Are rare variants responsible for susceptibility to complex diseases?

7 July 2018

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Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

7 July 2018

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Genomic control for association studies

7 July 2018

1 reference

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Transmission/disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

A New Statistical Method for Haplotype Reconstruction from Population Data

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Multipoint linkage-disequilibrium-mapping approach based on the case-parent trio design

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Accounting for unmeasured population substructure in case-control studies of genetic association using a novel latent-class model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Maximum likelihood estimation of recombination rates from population data.

7 July 2018

1 reference

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Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus

7 July 2018

1 reference

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Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism

7 July 2018

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Searching for genetic determinants in the new millennium

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Data mining applied to linkage disequilibrium mapping

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Bayesian fine-scale mapping of disease loci, by hidden Markov models.

7 July 2018

1 reference

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Association mapping in structured populations

7 July 2018

1 reference

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Haplotype fine mapping by evolutionary trees

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

A coalescent approach to study linkage disequilibrium between single-nucleotide polymorphisms

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Estimation of population parameters and recombination rates from single nucleotide polymorphisms.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Use of unlinked genetic markers to detect population stratification in association studies.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Linkage-disequilibrium mapping of disease genes by reconstruction of ancestral haplotypes in founder populations

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Disequilibrium likelihoods for fine-scale mapping of a rare allele.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Archaic African and Asian lineages in the genetic ancestry of modern humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Ancestral inference from samples of DNA sequences with recombination.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

The future of genetic studies of complex human diseases

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Transmission test for linkage disequilibrium: the insulin gene region and insulin-dependent diabetes mellitus (IDDM)

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Genetic dissection of complex traits

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

A powerful likelihood method for the analysis of linkage disequilibrium between trait loci and one or more polymorphic marker loci

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Evolutionary trees from DNA sequences: A maximum likelihood approach

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Identification of the cystic fibrosis gene: genetic analysis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

The gene encoding phosphodiesterase 4D confers risk of ischemic stroke

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Gene mapping via the ancestral recombination graph.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

High-resolution haplotype structure in the human genome

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Genetic variation in the 5q31 cytokine gene cluster confers susceptibility to Crohn disease

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1449137

Prospects for whole-genome linkage disequilibrium mapping of common disease genes

9 December 2018

1 reference

12 December 2020

Effect of allelic heterogeneity on the power of the transmission disequilibrium test

1 reference

12 December 2020

A comparison of estimators of the population recombination rate

1 reference

12 December 2020

Circumventing multiple testing: a multilocus Monte Carlo approach to testing for association

1 reference

12 December 2020

Linkage disequilibrium mapping of complex disease: fantasy or reality?

1 reference

12 December 2020

Haplotype tagging for the identification of common disease genes

1 reference

12 December 2020

From QTL to gene: the harvest begins

1 reference

12 December 2020

10.1534/GENETICS.104.031799

Identifiers

DOI

1 reference

3 August 2017

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3 August 2017

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