The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools (Q29615486)

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

1 reference

Lamesch P

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Berardini TZ

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30 April 2017

Li D

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30 April 2017

Swarbreck D

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30 April 2017

Wilks C

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30 April 2017

Sasidharan R

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30 April 2017

Muller R

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30 April 2017

Dreher K

1 reference

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30 April 2017

Alexander DL

1 reference

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30 April 2017

Garcia-Hernandez M

1 reference

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30 April 2017

Karthikeyan AS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Lee CH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Nelson WD

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Ploetz L

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Singh S

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Wensel A

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

Huala E

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

language of work or name

1 reference

30 April 2017

publication date

January 2012

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

published in

Nucleic Acids Research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

issue

Database issue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

page(s)

D1202-10

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

Creative Commons Attribution-NonCommercial 3.0 Unported

30 April 2017

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

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1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

30 April 2017

1 reference

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The development of Arabidopsis as a model plant

30 April 2017

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The IntAct molecular interaction database in 2010

30 April 2017

1 reference

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The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

30 April 2017

1 reference

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TopHat: discovering splice junctions with RNA-Seq

30 April 2017

1 reference

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Plant Ontology (PO): a Controlled Vocabulary of Plant Structures and Growth Stages

30 April 2017

1 reference

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

30 April 2017

1 reference

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Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes

30 April 2017

1 reference

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Locating proteins in the cell using TargetP, SignalP and related tools

30 April 2017

1 reference

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AceView: a comprehensive cDNA-supported gene and transcripts annotation

30 April 2017

1 reference

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Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release

30 April 2017

1 reference

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GMAP: a genomic mapping and alignment program for mRNA and EST sequences

30 April 2017

1 reference

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Textpresso: an ontology-based information retrieval and extraction system for biological literature

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

30 April 2017

1 reference

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Apollo: a sequence annotation editor

30 April 2017

1 reference

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InterProScan--an integration platform for the signature-recognition methods in InterPro

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Arabidopsis thaliana- the model plant to study host-pathogen interactions

30 April 2017

1 reference

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pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana

3 June 2018

1 reference

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A stress-free walk from Arabidopsis to crops

3 June 2018

1 reference

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The value of Arabidopsis research in understanding human disease states

3 June 2018

1 reference

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Arabidopsis as a model for wood formation.

3 June 2018

1 reference

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Using the Generic Synteny Browser (GBrowse_syn)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Creation of a genome-wide metabolic pathway database for Populus trichocarpa using a new approach for reconstruction and curation of metabolic pathways for plants

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Supersplat--spliced RNA-seq alignment

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

The Gene Ontology in 2010: extensions and refinements

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species

3 June 2018

1 reference

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Discovery and revision of Arabidopsis genes by proteogenomics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Browsing multidimensional molecular networks with the generic network browser (N-Browse)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Sequencing of natural strains of Arabidopsis thaliana with short reads

3 June 2018

1 reference

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The impact of Arabidopsis on human health: diversifying our portfolio

3 June 2018

1 reference

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Update of ASRP: the Arabidopsis Small RNA Project database

3 June 2018

1 reference

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The Arabidopsis Information Resource (TAIR): gene structure and function annotation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome

3 June 2018

1 reference

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A cross-species alignment tool (CAT)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection

3 June 2018

1 reference

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Disease induction by human microbial pathogens in plant-model systems: potential, problems and prospects

3 June 2018

1 reference

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AUGUSTUS: ab initio prediction of alternative transcripts

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Arabidopsis thaliana, a versatile model system for study of eukaryotic genome-maintenance functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245047

Can plant biotechnology help in solving our food and energy shortage in the future?

3 June 2018

1 reference

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Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.

21 January 2018

1 reference

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Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

21 January 2018

1 reference

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PseudoPipe: an automated pseudogene identification pipeline

21 January 2018

1 reference

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Features of Arabidopsis genes and genome discovered using full-length cDNAs

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/22140109

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture

1 reference

https://pubmed.ncbi.nlm.nih.gov/22140109

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

30 April 2017

journals/nar/LameschBLSWSMDAGKLNPSWH12

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

2 references

30 April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22140109

PubMed publication ID

2 references

30 April 2017