Textpresso: an ontology-based information retrieval and extraction system for biological literature (Q24793009)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

title

Textpresso: an ontology-based information retrieval and extraction system for biological literature (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

main subject

ontology

0 references

information retrieval

1 reference

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

Hans-Michael Müller

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

Paul W Sternberg

series ordinal

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

language of work or name

English

0 references

publication date

21 September 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

page(s)

e309

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

2 January 2020

start time

21 September 2004

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

cites work

PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

WormBase: network access to the genome and biology of Caenorhabditis elegans

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

EDGAR: extraction of drugs, genes and relations from the biomedical literature

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Gene ontology: tool for the unification of biology

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Can bibliographic pointers for known biological data be found automatically? Protein interactions as a case study

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Playing biology's name game: identifying protein names in scientific text.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Getting to the (c)ore of knowledge: mining biomedical literature

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

aph-1 and pen-2 are required for Notch pathway signaling, gamma-secretase cleavage of betaAPP, and presenilin protein accumulation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Rho-binding kinase (LET-502) and myosin phosphatase (MEL-11) regulate cytokinesis in the early Caenorhabditis elegans embryo.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Alpha spectrin is essential for morphogenesis and body wall muscle formation in Caenorhabditis elegans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

A literature network of human genes for high-throughput analysis of gene expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Biobibliometrics: information retrieval and visualization from co-occurrences of gene names in Medline abstracts.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Automated extraction of information in molecular biology

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Toward information extraction: identifying protein names from biological papers.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles.

30 May 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PBIO.0020309

SRC-1 and Wnt signaling act together to specify endoderm and to control cleavage orientation in early C. elegans embryos

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

The zinc finger protein REF-2 functions with the Hox genes to inhibit cell fusion in the ventral epidermis of C. elegans

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Tissue-specific regulation of the LIM homeobox gene lin-11 during development of the Caenorhabditis elegans egg-laying system

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Regulation of hypoxic death in C. elegans by the insulin/IGF receptor homolog DAF-2.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

C. elegans class B synthetic multivulva genes act in G(1) regulation

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

lon-1 regulates Caenorhabditis elegans body size downstream of the dbl-1 TGF beta signaling pathway

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

MEX-3 interacting proteins link cell polarity to asymmetric gene expression in Caenorhabditis elegans

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Mining literature for protein-protein interactions.

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Automated extraction of information on protein-protein interactions from the biological literature

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=517822

Automatic extraction of protein interactions from scientific abstracts

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15383839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Detecting Gene Symbols and Names in Biological Texts: A First Step toward Pertinent Information Extraction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15383839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15383839

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PBIO.0020309

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

15383839

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15383839%20AND%20SRC:MED&resulttype=core&format=json