Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs (Q37034608)

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English	Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

17 August 2017

Identification of miniature inverted-repeat transposable elements (MITEs) and biogenesis of their siRNAs in the Solanaceae: new functional implications for MITEs (English)

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Europe PubMed Central

PMC publication ID

17 August 2017

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9

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Barbara Baker

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Europe PubMed Central

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17 August 2017

author name string

Hanhui Kuang

1

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Europe PubMed Central

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17 August 2017

Chellappan Padmanabhan

2

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Europe PubMed Central

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17 August 2017

Feng Li

3

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Europe PubMed Central

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17 August 2017

Ayako Kamei

4

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Europe PubMed Central

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17 August 2017

Pudota B Bhaskar

5

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Europe PubMed Central

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17 August 2017

Shu Ouyang

6

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Europe PubMed Central

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17 August 2017

Jiming Jiang

7

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17 August 2017

C Robin Buell

8

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17 August 2017

publication date

26 November 2008

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17 August 2017

Genome Research

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17 August 2017

19

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Europe PubMed Central

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17 August 2017

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

42-56

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Europe PubMed Central

PMC publication ID

17 August 2017

Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening

1 reference

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Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Dual coding of siRNAs and miRNAs by plant transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

1 reference

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Sgt1, but not Rar1, is essential for the RB-mediated broad-spectrum resistance to potato late blight

1 reference

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Antiviral immunity directed by small RNAs

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Suppression of antiviral silencing by cucumber mosaic virus 2b protein in Arabidopsis is associated with drastically reduced accumulation of three classes of viral small interfering RNAs

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Epigenetic inheritance in plants.

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29 September 2017

Origin and evolution of human microRNAs from transposable elements.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

The function of RNAi in plant development.

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Short silencing RNA: the dark matter of genetics?

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Transposable elements and the epigenetic regulation of the genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Role of RNA polymerase IV in plant small RNA metabolism

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

A family of human microRNA genes from miniature inverted-repeat transposable elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

A novel role for the TIR domain in association with pathogen-derived elicitors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

The TIGR Plant Transcript Assemblies database

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Virus counterdefense: diverse strategies for evading the RNA-silencing immunity

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

miRBase: microRNA sequences, targets and gene nomenclature

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

MicroRNA biogenesis and function in plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

MicroRNA-binding viral protein interferes with Arabidopsis development

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Genetic and functional diversification of small RNA pathways in plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Using rice to understand the origin and amplification of miniature inverted repeat transposable elements (MITEs).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Chromosome organization and genic expression

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Transposable element annotation of the rice genome

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

The microRNA Registry

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Role of microRNAs in plant and animal development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Genome-wide analysis of mariner-like transposable elements in rice reveals complex relationships with stowaway miniature inverted repeat transposable elements (MITEs)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

An active DNA transposon family in rice

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

MicroRNAs in plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Functional analyses of the Pto resistance gene family in tomato and the identification of a minor resistance determinant in a susceptible haplotype

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Sequence and analysis of the tomato JOINTLESS locus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

Transposon diversity in Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance

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Transposable elements and the evolution of gene expression

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29 September 2017

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

29 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor

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Identification and characterization of putative transposable DNA elements in solanaceous plants and Caenorhabditis elegans

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

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Genome-wide analysis of the Emigrant family of MITEs of Arabidopsis thaliana.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

27 June 2018

Foldback transposable elements in plants

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Promoter analysis of genes that are coordinately expressed during pollen development reveals pollen-specific enhancer sequences and shared regulatory elements

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27 June 2018

Identification of novel small RNAs in tomato (Solanum lycopersicum).

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4 September 2018

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4 September 2018

Elicitor-mediated oligomerization of the tobacco N disease resistance protein

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4 September 2018

The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum.

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4 September 2018

Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication

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4 September 2018

Comparative genomics enabled the isolation of the R3a late blight resistance gene in potato.

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4 September 2018

A two-edged role for the transposable element Kiddo in the rice ubiquitin2 promoter

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4 September 2018

Pack-MULE transposable elements mediate gene evolution in plants

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4 September 2018

RNA silencing genes control de novo DNA methylation

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

4 September 2018

Genomic structure of the NtPDR1 gene, harboring the two miniature inverted-repeat transposable elements, NtToya1 and NtStowaway101.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

4 September 2018

Sequence and analysis of rice chromosome 4.

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4 September 2018

Nonautonomous inverted repeat Alien transposable elements are associated with genes of both monocotyledonous and dicotyledonous plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612961

4 September 2018

An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis

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20 October 2018

Do Plants Have a One-Way Ticket to Genomic Obesity?

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20 October 2018

Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways

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https://pubmed.ncbi.nlm.nih.gov/19037014

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination

1 reference

https://pubmed.ncbi.nlm.nih.gov/19037014

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complex organization and evolution of the tomato pericentromeric region at the FER gene locus

1 reference

https://pubmed.ncbi.nlm.nih.gov/19037014

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1101/GR.078196.108

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

ResearchGate publication ID

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