RNAstructure: software for RNA secondary structure prediction and analysis (Q24602642)

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English	RNAstructure: software for RNA secondary structure prediction and analysis	scientific article

Statements

instance of

scholarly article

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review article

1 reference

stated in

Europe PubMed Central

title

RNAstructure: software for RNA secondary structure prediction and analysis (English)

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main subject

RNA analysis

1 reference

based on heuristic

inferred from title

software

0 references

author name string

Jessica S Reuter

series ordinal

1

0 references

David H Mathews

series ordinal

2

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language of work or name

English

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publication date

2010

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published in

BMC Bioinformatics

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volume

11

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issue

1

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page(s)

129

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copyright license

Creative Commons Attribution 2.0 Generic

start time

15 March 2010

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stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

stated in

April 2022 Public Data File from Crossref

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Prediction of RNA secondary structure by free energy minimization

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Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change

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27 September 2017

Selection for thermodynamically stable DNA tetraloops using temperature gradient gel electrophoresis reveals four motifs: d(cGNNAg), d(cGNABg),d(cCNNGg), and d(gCNNGc).

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27 September 2017

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27 September 2017

The thermodynamics of formation of a three-strand, DNA three-way junction complex.

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27 September 2017

Relative stabilities of DNA three-way, four-way and five-way junctions (multi-helix junction loops): unpaired nucleotides can be stabilizing or destabilizing

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

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27 September 2017

NMR-assisted prediction of RNA secondary structure: identification of a probable pseudoknot in the coding region of an R2 retrotransposon

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From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal

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30 May 2018

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30 May 2018

Structure, dynamics, and thermodynamics of mismatched DNA oligonucleotide duplexes d(CCCAGGG)2 and d(CCCTGGG)2.

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Thermodynamic characterization of deoxyribooligonucleotide duplexes containing bulges.

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30 May 2018

Influence of an exocyclic guanine adduct on the thermal stability, conformation, and melting thermodynamics of a DNA duplex

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30 May 2018

The impact of target site accessibility on the design of effective siRNAs

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28 November 2018

Potent effect of target structure on microRNA function.

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28 November 2018

Thermodynamic coupling of the loop and stem in unusually stable DNA hairpins closed by CG base pairs

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28 November 2018

Thermodynamic prediction of conserved secondary structure: application to the RRE element of HIV, the tRNA-like element of CMV and the mRNA of prion protein

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28 November 2018

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

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28 November 2018

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

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Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability

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The effect of single base-pair mismatches on the duplex stability of d(T-A-T-T-A-A-T-A-T-C-A-A-G-T-T-G) . d(C-A-A-C-T-T-G-A-T-A-T-T-A-A-T-A)

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12 December 2020

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12 December 2020

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Influence of dangling thymidine residues on the stability and structure of two DNA duplexes

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12 December 2020

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Thermodynamics of DNA duplexes with adjacent G.cntdot.A mismatches

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12 December 2020

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Thermodynamic and structural properties of pentamer DNA.DNA, RNA.RNA, and DNA.RNA duplexes of identical sequence

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12 December 2020

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Sequence specific thermodynamic and structural properties for DNA.RNA duplexes

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12 December 2020

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Oligonucleotides Containing G.cntdot.A Pairs: Effect of Flanking Sequences on Structure and Stability

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA and RNA oligomer sequences from the 3' noncoding region of the chicken glutamine synthetase gene from intramolecular hairpins

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics and NMR of Internal G·T Mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/20230624

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/1471-2105-11-129

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

981751

DBLP publication ID

journals/bmcbi/ReuterM10

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

Dimensions Publication ID

1033348430

0 references

OpenCitations bibliographic resource ID

981751

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

981751

PMC publication ID

2984261

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

981751

PubMed publication ID

20230624

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

981751

ResearchGate publication ID

41968276

0 references

 

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