Thermodynamic parameters for DNA sequences with dangling ends (Q39545871)

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scientific article published on May 2000

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English	Thermodynamic parameters for DNA sequences with dangling ends	scientific article published on May 2000

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

title

Thermodynamic parameters for DNA sequences with dangling ends (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

author name string

S Bommarito

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

N Peyret

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

J SantaLucia

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

language of work or name

English

0 references

publication date

1 May 2000

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

published in

Nucleic Acids Research

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

volume

28

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

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12 September 2017

issue

9

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

page(s)

1929-1934

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stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

cites work

Experimental Measurement of Aromatic Stacking Affinities in the Context of Duplex DNA

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PubMed Central

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13 September 2017

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

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PubMed Central

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13 September 2017

Molecular beacons: probes that fluoresce upon hybridization

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13 September 2017

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

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13 September 2017

Base-base and deoxyribose-base stacking interactions in B-DNA and Z-DNA: a quantum-chemical study

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13 September 2017

Investigation of the structural basis for thermodynamic stabilities of tandem GU mismatches: solution structure of (rGAGGUCUC)2 by two-dimensional NMR and simulated annealing

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13 September 2017

A free energy analysis of nucleic acid base stacking in aqueous solution

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13 September 2017

Stability of ribonucleic acid double-stranded helices

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13 September 2017

Effect of ionic strength on the hybridization of oligodeoxynucleotides with reduced charge due to methylphosphonate linkages to unmodified oligodeoxynucleotides containing the complementary sequence

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PubMed Central

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13 September 2017

On finding all suboptimal foldings of an RNA molecule

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PubMed Central

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13 September 2017

Improved free-energy parameters for predictions of RNA duplex stability

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13 September 2017

Influence of pH on the conformation and stability of mismatch base-pairs in DNA.

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13 September 2017

Thermodynamics of internal C.T mismatches in DNA.

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PubMed Central

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14 September 2017

Studies of oligonucleotide interactions by hybridisation to arrays: the influence of dangling ends on duplex yield

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14 September 2017

New evidence that the hydrophobic effect and dispersion are not major driving forces for nucleotide base stacking

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PubMed Central

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17 June 2018

Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.

1 reference

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PubMed Central

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17 June 2018

Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects

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https://pubmed.ncbi.nlm.nih.gov/10756193

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12 December 2020

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Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG)

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/10756193

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12 December 2020

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Influence of dangling thymidine residues on the stability and structure of two DNA duplexes

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Improved nearest-neighbor parameters for predicting DNA duplex stability

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Influence of adjacent bases on the stacking-unstacking process of single-stranded oligonucleotides

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics and NMR of internal G.T mismatches in DNA

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/10756193

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/28.9.1929

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

PMC publication ID

103285

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

PubMed publication ID

10756193

1 reference

stated in

Europe PubMed Central

PMC publication ID

103285

retrieved

12 September 2017

ResearchGate publication ID

12560605

0 references

 

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