The human transcriptome: an unfinished story (Q28728363)

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English	The human transcriptome: an unfinished story	No description defined

Statements

instance of

scholarly article

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title

The human transcriptome: an unfinished story (English)

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author name string

Mihaela Pertea

series ordinal

1

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original language of film or TV show

English

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publication date

September 2012

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volume

3

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issue

3

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page(s)

344-60

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cites work

The Long Non-Coding RNAs: A New (P)layer in the "Dark Matter"

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PubMed Central

Very few RNA and DNA sequence differences in the human transcriptome

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PubMed Central

What fraction of the human genome is functional?

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PubMed Central

Microarrays, deep sequencing and the true measure of the transcriptome

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PubMed Central

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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PubMed Central

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA

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PubMed Central

Most "dark matter" transcripts are associated with known genes

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PubMed Central

Between a chicken and a grape: estimating the number of human genes

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PubMed Central

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

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PubMed Central

Recent de novo origin of human protein-coding genes

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PubMed Central

SOAP2: an improved ultrafast tool for short read alignment

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PubMed Central

Fast and accurate short read alignment with Burrows-Wheeler transform

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PubMed Central

TopHat: discovering splice junctions with RNA-Seq

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PubMed Central

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

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PubMed Central

Long non-coding RNAs: insights into functions

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PubMed Central

RNA-Seq: a revolutionary tool for transcriptomics

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PubMed Central

Alternative isoform regulation in human tissue transcriptomes

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PubMed Central

Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation

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PubMed Central

Stem cell transcriptome profiling via massive-scale mRNA sequencing

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PubMed Central

Mapping and quantifying mammalian transcriptomes by RNA-Seq

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PubMed Central

The transcriptional landscape of the yeast genome defined by RNA sequencing

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PubMed Central

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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PubMed Central

Deletion of ultraconserved elements yields viable mice

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PubMed Central

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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PubMed Central

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

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PubMed Central

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

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PubMed Central

The transcriptional landscape of the mammalian genome

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PubMed Central

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

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PubMed Central

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

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PubMed Central

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

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PubMed Central

Finishing the euchromatic sequence of the human genome

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PubMed Central

Detection of large-scale variation in the human genome

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PubMed Central

Large-scale copy number polymorphism in the human genome

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PubMed Central

Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22

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PubMed Central

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

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PubMed Central

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

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PubMed Central

The transcriptional activity of human Chromosome 22

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PubMed Central

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

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PubMed Central

Large-scale transcriptional activity in chromosomes 21 and 22

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PubMed Central

BLAT—The BLAST-Like Alignment Tool

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PubMed Central

Initial sequencing and analysis of the human genome

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PubMed Central

The Sequence of the Human Genome

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PubMed Central

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

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PubMed Central

Yeast microarrays for genome wide parallel genetic and gene expression analysis

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PubMed Central

Molecular cloning of an apolipoprotein B messenger RNA editing protein

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PubMed Central

3,400 new expressed sequence tags identify diversity of transcripts in human brain

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PubMed Central

The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14

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PubMed Central

Serial analysis of gene expression

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PubMed Central

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

1 reference

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PubMed Central

Identifiers

DOI

10.3390/GENES3030344

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PMC publication ID

3422666

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PubMed publication ID

22916334

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