The goal is to segment individual nuclei in microscopy images.
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Updated
Jan 11, 2019 - Jupyter Notebook
The goal is to segment individual nuclei in microscopy images.
Implementation of image segmentation networks using pytorch.
Implementation of U_Net architecture for medical image segmentation purpose.
This repository contains my implementations of the algorithms which we used for evaluation of the MoNuSeg challenge at MICCAI 2018.
Selected Topics in Visual Recognition using Deep Learning, NYCU. CodaLab competition - Instance Segmentation
Predicting breast cancer outcomes using ML.
Nucleia image segmentation with U-net...
WhoIsWho is Google Colab-based tool that aims to classify cells based on features related to their nuclei and their neighbours.
MICCAI-COMPAY-2021: An automatic nuclei image segmentation based on multi-scale split-attention u-net
GradMix for nuclei segmentation and classification in imbalanced pathology image datasets: MICCAI 2022
Performs instance segmentation and classification of nuclei in Multi-Tissue Histology WSIs(generally 100k*100k pixels).
Nuclei Segmentation using ResUNet
Using Deep Learning techniques for nuclei segmentation. Data extracted from Kaggle competition 2018 Data Science Bowl
compact version of the official hovernet impl in pytorch
ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.
A PyTorch Implementation of the StarDist Nuclei Segmentation Architecture.
MICCAI2023 - TransNuSeg: A Lightweight Multi-Task Transformer for Nuclei Segmentation
NUCLEI SEGMENTATION USING STARDIST AND PYTHON IN GOOGLE COLAB
Nuclei segmentation and classification (Cancer cells)
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
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