Selected Topics in Visual Recognition using Deep Learning, NYCU. CodaLab competition - Instance Segmentation
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Updated
Dec 17, 2021 - Python
Selected Topics in Visual Recognition using Deep Learning, NYCU. CodaLab competition - Instance Segmentation
Nucleia image segmentation with U-net...
ImageJ scripts for: (a) batch opening confocal files with two channels and merging them and (b) for a batch of confocal images with two channels, identifying nuclei as ROIs using one channel and quantifying the mean pixel intensity of each ROI using the other channel, and outputting results in Excel. Requirements and assumptions are in comments.
NUCLEI SEGMENTATION USING STARDIST AND PYTHON IN GOOGLE COLAB
WhoIsWho is Google Colab-based tool that aims to classify cells based on features related to their nuclei and their neighbours.
Using Deep Learning techniques for nuclei segmentation. Data extracted from Kaggle competition 2018 Data Science Bowl
A PyTorch Implementation of the StarDist Nuclei Segmentation Architecture.
Implementation of image segmentation networks using pytorch.
Nuclei Segmentation using ResUNet
Performs instance segmentation and classification of nuclei in Multi-Tissue Histology WSIs(generally 100k*100k pixels).
MIC-MAQ for Microscopy Images of Cells - Multi Analyses and Quantifications is an ImageJ/Fiji Plugin for automatic segmentation of nuclei and/or cells for quantifications in other channels including foci detection
Toolbox for histopathology image analysis
CompSegNet: An enhanced U-shaped architecture for nuclei segmentation in H&E histopathology images
Official Implemenation paper published at MICCAI 2024
MICCAI-COMPAY-2021: An automatic nuclei image segmentation based on multi-scale split-attention u-net
compact version of the official hovernet impl in pytorch
Predicting breast cancer outcomes using ML.
Implementation of U_Net architecture for medical image segmentation purpose.
The goal is to segment individual nuclei in microscopy images.
H&E ROI-Level and WSI-Level Nuclei Segmentation with HoVer-Net
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