The open-source version of PhenoTips is no longer maintained. PhenoTips makes it simple to record clinical findings observed in patients with possible genetic disorders through an easy-to-use Web interface

Java library to map LOINC-encoded test results to Human Phenotype Ontology

Perform text mining for identification of HPO terms in free text from scientific publication.

A modern Java library for working with (biological) ontologies.

Bayesian ontology querying from Bauer et al.

Pyrophen generates a FHIR Code system representing the Human Phenotype Ontology

Simulation of disease-phenotype annotation with imprecision and noise.

PhenoteFX

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Code to generate ontology annotated objects (e.g. HPO annotated patients)

The QC software for the OWL version of HPO (only text-checks, not so much logic included)

The QC software for the OBO version of HPO

PhenoUnit testing framework