A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

#ZVQ - Zebrafish Vascular Quantification - https://doi.org/10.1242/dev.199720

A vocabulary for describing Zebrafish Phenotypes

Software for performing offline tracking of zebrafish larvae.

#GliaMorph - Toolkit to Process and Analyse Müller Glia Morphology

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

Modelling the larval zebrafish field of view for illustration purposes

Zebrafish embryo fluorescence quantification

A simple tool for zebrafish brain visualization.

Behavioral and Transcriptomic Analyses of mecp2 Function in Zebrafish

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response

Early life GC exposed time-series mRNA-seq analysis and DNA methylome

Set of functions, scripts and notebooks used in the brain-wide auditory processing project

Computing functional maps in zebrafish brain

Zebrafish project for Champalimaud Research

This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.

This is a collection of Knime workflows developed for the analysis of the data obtained with the FishInspector software

Behaviour analysis tracking and data analysis software using machine vision to track larval zebrafish behaviour. Software is built using C++,QT and OpenCV, while R scripts are used for data analysis and figure generation.