A theoretical Informatic Model that could explain How Crispr Cas 9 Works
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Updated
Feb 22, 2024 - Java
A theoretical Informatic Model that could explain How Crispr Cas 9 Works
This repo contains computational analysis performed in Li21.
Cell lineage tree estimation via Star Homoplasy parsimony; also applicable to Camin-Sokal parsimony with binary characters
Script used to cdesign sgRNA sequences based on desired input parameters comparing different web-based tools
CRISPR-Cas9 Excision Therapy Suitability
An efficient tool for CRISPR experiment design
Prediction of protein-protein interaction between anti-crispr protein (acr) and CRISPR-associated (cas) protein using machine learning algorithm
Overview of CRISPR-Cas9 and other gene editing methods - an assignment for the Computational Genomics course at the School of Electrical Engineering, University of Belgrade.
A Bayesian hierarchical model to discover tissue-specific cancer driver genes and synthetic lethal interactions from CRISPR/Cas9 LoF screens.
Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"
This repository accompanies my research into the interpretability of DNA Damage Repair Outcome Predictors (DROPs). By analyzing these models using interpretability methods, we hope to uncover what features specifically are driving the accuracy of these prediction models.
Accurate prediction of CRISPR-Cas9 off-target activity by learning to utilize internal protein 3D nanoenvironment descriptors
Research associated to CRISPR-Cas. Completed under Dr. Manuel Lladser at CU boulder
Deep Learning Cas9 Activity Predictor
HERACLES algorithm reconstructs CRISPR-Cas9 lineages with hyperbolic embeddings
*HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection
Caroline Beck's lab pages
This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.
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