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1. PertEval PertEval Public

   Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.

   Jupyter Notebook 17 1

2. geneius geneius Public

   Geneius is a powerful command-line tool leveraging Anthropic AI's Claude API to help you search through scientific literature and extract evidence for disease-gene associations.

   Python 4

3. interpreting-ml-based-drops interpreting-ml-based-drops Public

   This repository accompanies my research into the interpretability of DNA Damage Repair Outcome Predictors (DROPs). By analyzing these models using interpretability methods, we hope to uncover what …

   Python

4. cfrnet-reproduction cfrnet-reproduction Public

   Reproducing Shalit et al.'s Individual Treatment Effect model. This is a deep neural net that can be applied to various problems in causal inference.

   Python 14 4

5. spotify-top100 spotify-top100 Public

   The following scripts parses through your own playlist and extracts the most popular songs based on popularity data from Spotify and Genius. If you want to extract the 100 (or any other number) mos…

   Python

6. dna-damage-cluster-size-investigation dna-damage-cluster-size-investigation Public archive

   This repository contains Python scripts accompanying my Bachelor thesis in Nanobiology. In this thesis, the validity of Geant4-DNA in simulating DNA damage foci is assessed with the help of experim…

   Python 1